RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ADSSP30520 456 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 DLG4P78352 724 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 MRPS5P82675 430 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 HTRA4P83105 476 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 ADAM9Q13443 819 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 STXBP4Q6ZWJ1 553 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 CMTR2Q8IYT2 770 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 GSTCDQ8NEC7 633 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 ZNF483Q8TF39 744 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 BAG1Q99933 345 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 SMG9Q9H0W8 520 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 DPP3Q9NY33 737 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 MUTYHQ9UIF7 546 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 CNTNAP2Q9UHC6 1331 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 LRRC37A2A6NM11 1700 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 SKIP12755 728 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 CMA1P23946 247 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 USP41Q3LFD5 358 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 SLC39A12Q504Y0 691 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 CAPN12Q6ZSI9 719 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 ZNF598Q86UK7 904 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 SLC39A11Q8N1S5 342 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 SYAP1Q96A49 352 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 FAXDC2Q96IV6 333 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 FAM81BQ96LP2 452 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 DUSP9Q99956 384 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 MED10Q9BTT4 135 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 TTPALQ9BTX7 342 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 LMCD1Q9NZU5 365 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 TNFSF13BQ9Y275 285 aa8.42□□□□□ -1.06
LIMCH1-219ENST00000514096 ZNF233A6NK53 670 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 CYB561D2O14569 222 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 BEST2Q8NFU1 509 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 SCFD1Q8WVM8 642 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 DNAI2Q9GZS0 605 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 KANSL3Q9P2N6 904 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 PHLPP2Q6ZVD8 1323 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 C8AP07357 584 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 CLTAP09496 248 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 CD19P15391 556 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 PPM1AP35813 382 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 YWHAHQ04917 246 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 PTPN14Q15678 1187 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 SNRNP35Q16560 246 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 DDR2Q16832 855 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 PARP9Q8IXQ6 854 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 PAF1Q8N7H5 531 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 GPT2Q8TD30 523 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 KHSRPQ92945 711 aaKnown RBP eCLIP8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 SENP8Q96LD8 212 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 VN1R3Q9BXE9 311 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 AASDHPPTQ9NRN7 309 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 FBXL21Q9UKT6 434 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 USP15Q9Y4E8 981 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 TRIP11Q15643 1979 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 TNNC2P02585 160 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 WEE1P30291 646 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 GRIK3Q13003 919 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 KCNB1Q14721 858 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 VARS2Q5ST30 1063 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 EFCAB13Q8IY85 973 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 COLGALT2Q8IYK4 626 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 KREMEN2Q8NCW0 462 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 EZH1Q92800 747 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 ZNF689Q96CS4 500 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 SMPD4Q9NXE4 827 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 TMA7Q9Y2S6 64 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 GIT1Q9Y2X7 761 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 COL4A6Q14031 1691 aa8.41□□□□□ -1.06
LIMCH1-219ENST00000514096 SF3B1O75533 1304 aaKnown RBP eCLIP8.41□□□□□ -1.061e-8■■■■■ 160.4
LIMCH1-219ENST00000514096 RBBP6Q7Z6E9 1792 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 C2orf71A6NGG8 1288 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 ACTN4O43707 911 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 MYL1P05976 194 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 ADRB2P07550 413 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 CFHP08603 1231 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 ADORA2BP29275 332 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 GPR15P49685 360 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 SH3BGRP55822 239 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 RBL2Q08999 1139 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 DCAF4L1Q3SXM0 396 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 PPM1LQ5SGD2 360 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 ATAT1Q5SQI0 421 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 OVOS1Q6IE37 1185 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 RSPO2Q6UXX9 243 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 MRPL43Q8N983 215 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 KIAA0895Q8NCT3 520 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 EMILIN2Q9BXX0 1053 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 MARCH5Q9NX47 278 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 MAP1BP46821 2468 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 TGM5O43548 720 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 KRT38O76015 456 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 CST3P01034 146 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 LRG1P02750 347 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 RPLP2P05387 115 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 ADH1AP07327 375 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 KRT13P13646 458 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 PRCPP42785 496 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 APBA1Q02410 837 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 ARID5AQ03989 594 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms