RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ELF2Q15723 593 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 TAF12Q16514 161 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 SH3PXD2AQ5TCZ1 1133 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 ZPBP2Q6X784 338 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 MAB21L3Q8N8X9 362 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 IGSF22Q8N9C0 903 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 RPLP0P6Q8NHW5 317 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 RIN3Q8TB24 985 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 USP13Q92995 863 aaPredicted RBP22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 C8orf76Q96K31 380 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 C17orf75Q9HAS0 396 aa22.04■■□□□ 1.12
SQSTM1-215ENST00000514093 BCLAF3A2AJT9 711 aaKnown RBP22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 RHOBTB1O94844 696 aa22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 ODC1P11926 461 aa22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 PLS3P13797 630 aa22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 KDF1Q8NAX2 398 aaPredicted RBP22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 SPIRE2Q8WWL2 714 aa22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 FAM212AQ96EL1 285 aa22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 BICD1Q96G01 975 aa22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 FOXP1Q9H334 677 aaPredicted RBP22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 WASF3Q9UPY6 502 aa22.03■■□□□ 1.12
SQSTM1-215ENST00000514093 LNP1A1A4G5 178 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 GBP1P32455 592 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 AVPR1AP37288 418 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 SMTNP53814 917 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 BFSP1Q12934 665 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 ENOX2Q16206 610 aaKnown RBP22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 IL17AQ16552 155 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 DAB2IPQ5VWQ8 1189 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 KRT79Q5XKE5 535 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 TMEM150AQ86TG1 271 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 P2RY13Q9BPV8 354 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 TMEM121BQ9BXQ6 578 aaPredicted RBP22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 ZCWPW1Q9H0M4 648 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 HSFX1Q9UBD0 423 aa22.02■■□□□ 1.12
SQSTM1-215ENST00000514093 XPOTO43592 962 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 DRD1P21728 446 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 GUCY2CP25092 1073 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 ANAPC15P60006 121 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 GNL2Q13823 731 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 SPATA1Q5VX52 437 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 TXNDC8Q6A555 127 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 LRRTM3Q86VH5 581 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 STKLD1Q8NE28 680 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 TTC16Q8NEE8 873 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 EZH1Q92800 747 aaPredicted RBP22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 MMTAG2Q9BU76 263 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 ADAM33Q9BZ11 813 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 TDP1Q9NUW8 608 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 STK24Q9Y6E0 443 aa22.01■■□□□ 1.11
SQSTM1-215ENST00000514093 IGF2RP11717 2491 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 NPHP3-ACAD11A0A0J9YXS1 232 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 F11P03951 625 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 GJA4P35212 333 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 DGKEP52429 567 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 PSMD2Q13200 908 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 DMC1Q14565 340 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 C9orf57Q5W0N0 161 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 JADE1Q6IE81 842 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 CC2D1AQ6P1N0 951 aaPredicted RBP22■■□□□ 1.11
SQSTM1-215ENST00000514093 PLIN2Q99541 437 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 RAB34Q9BZG1 259 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 RPF1Q9H9Y2 349 aaKnown RBP22■■□□□ 1.11
SQSTM1-215ENST00000514093 NOL7Q9UMY1 257 aaKnown RBP22■■□□□ 1.11
SQSTM1-215ENST00000514093 PCDHB6Q9Y5E3 794 aa22■■□□□ 1.11
SQSTM1-215ENST00000514093 ANK1P16157 1881 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 ZFYVE26Q68DK2 2539 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 PATE3B3GLJ2 98 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 APBB3O95704 486 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 HAPLN1P10915 354 aaPredicted RBP21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 NEK4P51957 841 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 NLRP12P59046 1061 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 AMPD2Q01433 879 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 SYT13Q7L8C5 426 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 TIPINQ9BVW5 301 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 SCNM1Q9BWG6 230 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 TPSD1Q9BZJ3 242 aa21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 ABI2Q9NYB9 513 aaPredicted RBP21.99■■□□□ 1.11
SQSTM1-215ENST00000514093 KHNYNO15037 678 aaKnown RBP21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 FAM189A1O60320 539 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 CYP11A1P05108 521 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 NFICP08651 508 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 HMGA1P17096 107 aaKnown RBP21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 TRAPPC10P48553 1259 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 GPR15P49685 360 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 LIG4P49917 911 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 TOB1P50616 345 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 KARSQ15046 597 aaKnown RBP21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 UAP1L1Q3KQV9 507 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 EBF1Q9UH73 591 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 TBX20Q9UMR3 447 aa21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 MAGED2Q9UNF1 606 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-215ENST00000514093 TSC2P49815 1807 aa21.97■■□□□ 1.11
SQSTM1-215ENST00000514093 SRRM3A6NNA2 597 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-215ENST00000514093 PIRO00625 290 aa21.97■■□□□ 1.11
SQSTM1-215ENST00000514093 CDX4O14627 284 aaPredicted RBP21.97■■□□□ 1.11
SQSTM1-215ENST00000514093 FBXO43Q4G163 708 aa21.97■■□□□ 1.11
SQSTM1-215ENST00000514093 SDHAF4Q5VUM1 108 aa21.97■■□□□ 1.11
SQSTM1-215ENST00000514093 KIAA1211LQ6NV74 962 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms