RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 ERICH1Q86X53 443 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 IFT20Q8IY31 132 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 HACE1Q8IYU2 909 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 NIPA2Q8N8Q9 360 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 C3orf20Q8ND61 904 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 CCDC26Q8TAB7 109 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.88□□□□□ -0.99
RNF4-220ENST00000513578 FNIP1Q8TF40 1166 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 MAIP1Q8WWC4 291 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 ALG3Q92685 438 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 ZNF560Q96MR9 790 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 RUNDC3BQ96NL0 473 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 C11orf70Q9BRQ4 267 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 NT5C1AQ9BXI3 368 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 MIS12Q9H081 205 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 NXF3Q9H4D5 531 aaKnown RBP8.88□□□□□ -0.99
RNF4-220ENST00000513578 SMYD3Q9H7B4 428 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 VIPAS39Q9H9C1 493 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 ERVK-5Q9HDB9 667 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 SAGE1Q9NXZ1 904 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 SMARCAL1Q9NZC9 954 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 DMGDHQ9UI17 866 aaKnown RBP8.88□□□□□ -0.99
RNF4-220ENST00000513578 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.88□□□□□ -0.99
RNF4-220ENST00000513578 GINS2Q9Y248 185 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.88□□□□□ -0.99
RNF4-220ENST00000513578 IPPQ9Y573 584 aa8.88□□□□□ -0.99
RNF4-220ENST00000513578 GOLGA6L10A0A0M3HER8 536 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SIGLEC16A6NMB1 481 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 O00370 1275 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 KRIT1O00522 736 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 FSCN2O14926 492 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SPOPO43791 374 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 FGGP02679 453 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 CHRNA1P02708 482 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 GPD2P43304 727 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 RAP1GAPP47736 663 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 RAB27AP51159 221 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 NDST1P52848 882 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 CDH8P55286 799 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 NNTQ13423 1086 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 PIGHQ14442 188 aaPredicted RBP8.87□□□□□ -0.99
RNF4-220ENST00000513578 ACAP1Q15027 740 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 TRIM71Q2Q1W2 868 aaKnown RBP8.87□□□□□ -0.99
RNF4-220ENST00000513578 SV2CQ496J9 727 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SGO2Q562F6 1265 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SEL1L2Q5TEA6 688 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 ARHGAP17Q68EM7 881 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 DENND1BQ6P3S1 775 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 EMBQ6PCB8 327 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SCARA5Q6ZMJ2 495 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 MAATS1Q7Z4T9 603 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 PASD1Q8IV76 773 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 RHOT1Q8IXI2 618 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 KATNAL2Q8IYT4 538 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 CRYBG2Q8N1P7 616 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 TOP6BLQ8N6T0 577 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SLC43A3Q8NBI5 491 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SLAIN1Q8ND83 568 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 C1orf131Q8NDD1 294 aaKnown RBP8.87□□□□□ -0.99
RNF4-220ENST00000513578 AENQ8WTP8 325 aaKnown RBP8.87□□□□□ -0.99
RNF4-220ENST00000513578 STK32AQ8WU08 396 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SEC14L1Q92503 715 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 KRT35Q92764 455 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 MCRS1Q96EZ8 462 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 PPP1R10Q96QC0 940 aaKnown RBP8.87□□□□□ -0.99
RNF4-220ENST00000513578 TWNKQ96RR1 684 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 KRT12Q99456 494 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 UBXN6Q9BZV1 441 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 CYLDQ9NQC7 956 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 SLC38A7Q9NVC3 462 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 TUBGCP4Q9UGJ1 667 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 ST3GAL5Q9UNP4 418 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 GIT1Q9Y2X7 761 aa8.87□□□□□ -0.99
RNF4-220ENST00000513578 TNRC18O15417 2968 aaPredicted RBP8.86□□□□□ -0.99
RNF4-220ENST00000513578 FAM187AA6NFU0 413 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 TMEM110-MUSTN1A8MSY1 372 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 INPPL1O15357 1258 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 SART1O43290 800 aaKnown RBP8.86□□□□□ -0.99
RNF4-220ENST00000513578 PHF2O75151 1096 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 MICAL2O94851 1124 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 SEC31AO94979 1220 aaKnown RBP8.86□□□□□ -0.99
RNF4-220ENST00000513578 SKIP12755 728 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 CD19P15391 556 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 ELNP15502 786 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 AKAP5P24588 427 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 CHRNA3P32297 505 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 RPL34P49207 117 aaKnown RBP8.86□□□□□ -0.99
RNF4-220ENST00000513578 TAF6P49848 677 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 DNA2P51530 1060 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 GUCY2FP51841 1108 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 ACLYP53396 1101 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 EPHB4P54760 987 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 DRG2P55039 364 aaKnown RBP8.86□□□□□ -0.99
RNF4-220ENST00000513578 SNX16P57768 344 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 CUL1Q13616 776 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 DHX34Q14147 1143 aaKnown RBP8.86□□□□□ -0.99
RNF4-220ENST00000513578 DSC3Q14574 896 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 PTGISQ16647 500 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 PTPN20Q4JDL3 420 aa8.86□□□□□ -0.99
RNF4-220ENST00000513578 PKDCCQ504Y2 493 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms