RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 DSTYKQ6XUX3 929 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 FBXL13Q8NEE6 735 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 CASP10Q92851 521 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 KIAA1683Q9H0B3 1180 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 VPS33BQ9H267 617 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 ELP3Q9H9T3 547 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 TOPORSQ9NS56 1045 aaPredicted RBP11.77□□□□□ -0.53
TCOF1-211ENST00000513346 LRRC4BQ9NT99 713 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 PARVAQ9NVD7 372 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 GGA3Q9NZ52 723 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SLC9A2Q9UBY0 812 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 ITGB1BP2Q9UKP3 347 aa11.77□□□□□ -0.53
TCOF1-211ENST00000513346 SMAPO00193 183 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 TYK2P29597 1187 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 SREBF2Q12772 1141 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 LBRQ14739 615 aaKnown RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 TRADDQ15628 312 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 ANGEL2Q5VTE6 544 aaKnown RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 IYDQ6PHW0 289 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 CCNYQ8ND76 341 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 SCFD2Q8WU76 684 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 PBXIP1Q96AQ6 731 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 RMDN2Q96LZ7 410 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 TEX13BQ9BXU2 312 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 STX18Q9P2W9 335 aaKnown RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 SLC24A2Q9UI40 661 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 WDR46O15213 610 aaKnown RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 WEE2P0C1S8 567 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 RALAP11233 206 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 ENO3P13929 434 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 CHI3L2Q15782 390 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 TRIM16LQ309B1 348 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 MFSD14CQ5VZR4 134 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 SIX6OS1Q8N1H7 587 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 DCLK2Q8N568 766 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 MCUQ8NE86 351 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 GCOM2Q9BZD3 368 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 ADARB2Q9NS39 739 aaKnown RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 KRT82Q9NSB4 513 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 PCDHA10Q9Y5I2 948 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 C3P01024 1663 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 BCL9O00512 1426 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 AIM2O14862 343 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 IL10P22301 178 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 TAF1CQ15572 869 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF568Q3ZCX4 644 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 DNAAF5Q86Y56 855 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 OR6B3Q8NGW1 331 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 ATG4AQ8WYN0 398 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 ZFRQ96KR1 1074 aaKnown RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 NR1H4Q96RI1 486 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 MTRQ99707 1265 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 EIF2AK1Q9BQI3 630 aaKnown RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 TMEM106CQ9BVX2 250 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 CHORDC1Q9UHD1 332 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-211ENST00000513346 ATP11BQ9Y2G3 1177 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 KIF1AQ12756 1690 aa11.76□□□□□ -0.53
TCOF1-211ENST00000513346 SPDYE16A6NNV3 312 aaPredicted RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 NPTXRO95502 500 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 ARL4AP40617 200 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 ROR1Q01973 937 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SNAPC2Q13487 334 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SEC23AQ15436 765 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SPDYE2Q495Y8 402 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF394Q53GI3 561 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 MARK2Q7KZI7 788 aaKnown RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SAMD7Q7Z3H4 446 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 MYLK4Q86YV6 388 aaPredicted RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SLC4A9Q96Q91 983 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 FAM213AQ9BRX8 229 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SYCE1LA8MT33 242 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 DRG2P55039 364 aaKnown RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 NUP107P57740 925 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 FLOT2Q14254 428 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 EPHA7Q15375 998 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 TWF2Q6IBS0 349 aaKnown RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 B3GNT6Q6ZMB0 384 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 GPR141Q7Z602 305 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SPATA33Q96N06 139 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 ARHGAP26Q9UNA1 814 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 TYW5A2RUC4 315 aaKnown RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 C19orf81C9J6K1 198 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 TM9SF1O15321 606 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 PSMC3P17980 439 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 GNA15P30679 374 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 BNIP1Q12981 228 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 MAPRE2Q15555 327 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 BBS5Q8N3I7 341 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 ZNF280CQ8ND82 737 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 MMADHCQ9H3L0 296 aaPredicted RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 ZFYVE28Q9HCC9 887 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 XPO7Q9UIA9 1087 aaKnown RBP11.75□□□□□ -0.53
TCOF1-211ENST00000513346 AP4S1Q9Y587 144 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SMIM31A0A1B0GVY4 71 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 FCHO1O14526 889 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 DAB1O75553 588 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SERPINB10P48595 397 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 TRPC1P48995 793 aa11.75□□□□□ -0.53
TCOF1-211ENST00000513346 SERPINB9P50453 376 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms