RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MLF2Q15773 248 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 SV2CQ496J9 727 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 SLC39A12Q504Y0 691 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 FAM26FQ5R3K3 315 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 CENPPQ6IPU0 288 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 BRSK2Q8IWQ3 736 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 ATAD1Q8NBU5 361 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 CACTINQ8WUQ7 758 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 ELSPBP1Q96BH3 223 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 ZNF560Q96MR9 790 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 TMEM209Q96SK2 561 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 CBWD1Q9BRT8 395 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 FGFBP2Q9BYJ0 223 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 FOXQ1Q9C009 403 aa19.38■□□□□ 0.69
SQSTM1-209ENST00000504627 KPNA7A9QM74 516 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 GFRA3O60609 400 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 VNN2O95498 520 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 GJA1P17302 382 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 PNPLA4P41247 253 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 STIM1Q13586 685 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 FAM78AQ5JUQ0 283 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 ISM2Q6H9L7 571 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 ZSWIM2Q8NEG5 633 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 PLA2G2FQ9BZM2 168 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 RBSNQ9H1K0 784 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 CRISPLD1Q9H336 500 aa19.37■□□□□ 0.69
SQSTM1-209ENST00000504627 KANSL1LA0AUZ9 987 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 EXTL3O43909 919 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 ITGB3P05106 788 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 ERCC5P28715 1186 aaPredicted RBP19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 EPHA5P54756 1037 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 GRM2Q14416 872 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 UBXN2BQ14CS0 331 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 TEAD2Q15562 447 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 MGAT5BQ3V5L5 792 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 WSCD1Q658N2 575 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 POTEHQ6S545 545 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 GPD1LQ8N335 351 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 KIAA0895Q8NCT3 520 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 PJA1Q8NG27 643 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 OR10T2Q8NGX3 314 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 SMARCD2Q92925 531 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 ASB16Q96NS5 453 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 SEPT5Q99719 369 aaPredicted RBP19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 GPR88Q9GZN0 384 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 BRD9Q9H8M2 597 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 CBX8Q9HC52 389 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 AGAP1Q9UPQ3 857 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 R3HCC1Q9Y3T6 440 aaKnown RBP19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 ASB3Q9Y575 518 aa19.36■□□□□ 0.69
SQSTM1-209ENST00000504627 ZFHX2Q9C0A1 2572 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 A0A1W2PRU2 124 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 KIAA0391O15091 583 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 SOAT2O75908 522 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 KRT19P08727 400 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 TMEM191BP0C7N4 346 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 POLR2BP30876 1174 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 NBL1P41271 181 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 TUFMP49411 452 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 CDR1P51861 262 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 VEPH1Q14D04 833 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 ITIH5Q86UX2 942 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 CSGALNACT2Q8N6G5 542 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 RNF214Q8ND24 703 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 ZSCAN18Q8TBC5 510 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 HPS3Q969F9 1004 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 ZSWIM3Q96MP5 696 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 TRMT61BQ9BVS5 477 aaKnown RBP19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 ZCWPW1Q9H0M4 648 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 ANK1P16157 1881 aa19.35■□□□□ 0.69
SQSTM1-209ENST00000504627 SCN1AP35498 2009 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 UBE4BO95155 1302 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 PROB1E7EW31 1015 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 NRG2O14511 850 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 PSMA7O14818 248 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 IKBKBO14920 756 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 MOSPD3O75425 235 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 FCARP24071 287 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 WNT7BP56706 349 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 SMARCB1Q12824 385 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 STK4Q13043 487 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 IQCB1Q15051 598 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 TAF12Q16514 161 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 TPRG1Q6ZUI0 275 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 FRMD5Q7Z6J6 570 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 DNAJB7Q7Z6W7 309 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 SMYD4Q8IYR2 804 aaPredicted RBP19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 DCP1BQ8IZD4 617 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 ADSSL1Q8N142 457 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 TTC9BQ8N6N2 239 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 C1orf127Q8N9H9 656 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 GLIS3Q8NEA6 775 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 SHKBP1Q8TBC3 707 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 PSMG2Q969U7 264 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 BORCS6Q96GS4 357 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 BCO2Q9BYV7 579 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 GRPEL1Q9HAV7 217 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 PDE11AQ9HCR9 933 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 HEBP1Q9NRV9 189 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 HSFX1Q9UBD0 423 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms