RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SPATA31D4Q6ZUB0 917 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 NEK11Q8NG66 645 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 KREMEN1Q96MU8 473 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 ERGIC2Q96RQ1 377 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 LPIN3Q9BQK8 851 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 SYT15Q9BQS2 421 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 DPEP3Q9H4B8 488 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 NSUN3Q9H649 340 aaKnown RBP12.71□□□□□ -0.37
CUX1-210ENST00000497815 MTMR10Q9NXD2 777 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 DNAJC12Q9UKB3 198 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 SIK3Q9Y2K2 1263 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 STXBP5LQ9Y2K9 1186 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 PCDHB4Q9Y5E5 795 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 IRAK3Q9Y616 596 aa12.71□□□□□ -0.37
CUX1-210ENST00000497815 VWA8A3KMH1 1905 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 OR6C75A6NL08 312 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 EPHB6O15197 1021 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 AP5Z1O43299 807 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 CBFA2T2O43439 604 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 TBC1D4O60343 1298 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 CLASP2O75122 1294 aaKnown RBP12.7□□□□□ -0.38
CUX1-210ENST00000497815 TPM3P06753 285 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 ADH1AP07327 375 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 FOSL2P15408 326 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 PCSK1P29120 753 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 GTF2F1P35269 517 aaKnown RBP eCLIP12.7□□□□□ -0.382e-8■■■□□ 18.7
CUX1-210ENST00000497815 USP8P40818 1118 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 MFAP3P55082 362 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 YWHAEP62258 255 aaKnown RBP12.7□□□□□ -0.38
CUX1-210ENST00000497815 TSPY1Q01534 308 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 ROR1Q01973 937 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 GCNT1Q02742 428 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 RAPGEF1Q13905 1077 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 CCDC85BQ15834 202 aaPredicted RBP12.7□□□□□ -0.38
CUX1-210ENST00000497815 SLC39A12Q504Y0 691 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 IQCEQ6IPM2 695 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 DPY19L2P1Q6NXN4 242 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 ACOT1Q86TX2 421 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 GPR65Q8IYL9 337 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 SPATA18Q8TC71 538 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 PPP2R3CQ969Q6 453 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 PGLYRP2Q96PD5 576 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 TWNKQ96RR1 684 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 ACBD6Q9BR61 282 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 TRIM5Q9C035 493 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 ZCWPW1Q9H0M4 648 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 LMCD1Q9NZU5 365 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 FNIP2Q9P278 1114 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 GTF3C4Q9UKN8 822 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 BARX2Q9UMQ3 279 aaPredicted RBP12.7□□□□□ -0.38
CUX1-210ENST00000497815 FHOD1Q9Y613 1164 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 CHD7Q9P2D1 2997 aa12.7□□□□□ -0.38
CUX1-210ENST00000497815 WDR27A2RRH5 827 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 MYBPHLA2RUH7 354 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 TGM5O43548 720 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 CILPO75339 1184 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 FAM163BP0C2L3 166 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 KRT5P13647 590 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 UCHL3P15374 230 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 EPCAMP16422 314 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 PTPN1P18031 435 aaKnown RBP12.69□□□□□ -0.38
CUX1-210ENST00000497815 POLR2FP61218 127 aaKnown RBP12.69□□□□□ -0.38
CUX1-210ENST00000497815 RBM10P98175 930 aaKnown RBP12.69□□□□□ -0.38
CUX1-210ENST00000497815 INCA1Q0VD86 236 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 HYAL1Q12794 435 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 DUSP6Q16828 381 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 MDH1BQ5I0G3 518 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 INTS6LQ5JSJ4 861 aaKnown RBP12.69□□□□□ -0.38
CUX1-210ENST00000497815 SLC8B1Q6J4K2 584 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 TMEM270Q6UE05 265 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 RNF19BQ6ZMZ0 732 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 LRRTM3Q86VH5 581 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 GPIHBP1Q8IV16 184 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 DCP1BQ8IZD4 617 aaKnown RBP12.69□□□□□ -0.38
CUX1-210ENST00000497815 WHAMMQ8TF30 809 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 PPM1EQ8WY54 764 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 FAXDC2Q96IV6 333 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 NT5C1AQ9BXI3 368 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 OXCT2Q9BYC2 517 aaPredicted RBP12.69□□□□□ -0.38
CUX1-210ENST00000497815 ELOVL4Q9GZR5 314 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 GANQ9H2C0 597 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 NLRC4Q9NPP4 1024 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 PLCB1Q9NQ66 1216 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 CRTAC1Q9NQ79 661 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 TMLHEQ9NVH6 421 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 CDH9Q9ULB4 789 aa12.69□□□□□ -0.38
CUX1-210ENST00000497815 A0A1W2PQC6 194 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 NOL4O94818 638 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 GLUD1P00367 558 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 CALCAP01258 141 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 PNMA6AP0CW24 399 aaPredicted RBP12.68□□□□□ -0.38
CUX1-210ENST00000497815 TRIM21P19474 475 aaKnown RBP12.68□□□□□ -0.38
CUX1-210ENST00000497815 POU3F3P20264 500 aaPredicted RBP12.68□□□□□ -0.38
CUX1-210ENST00000497815 ACO1P21399 889 aaKnown RBP12.68□□□□□ -0.38
CUX1-210ENST00000497815 CLCN4P51793 760 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 RAD23BP54727 409 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 CYP27A1Q02318 531 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 RAB33AQ14088 237 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 EP400NLQ6ZTU2 488 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 ENOSF1Q7L5Y1 443 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms