RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 PTK6Q13882 451 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 TRIM60Q495X7 471 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 ANO5Q75V66 913 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 NSUN4Q96CB9 384 aaKnown RBP13.7□□□□□ -0.22
COL6A3-212ENST00000491769 REEP2Q9BRK0 252 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 EMILIN2Q9BXX0 1053 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 VPS28Q9UK41 221 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 SRP72O76094 671 aaKnown RBP13.7□□□□□ -0.22
COL6A3-212ENST00000491769 FBXW10Q5XX13 1052 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 LINC00116Q8NCU8 138 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 OSBPL9Q96SU4 736 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 CAB39Q9Y376 341 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-212ENST00000491769 V9GYQ6 96 aa13.7□□□□□ -0.22
COL6A3-212ENST00000491769 SYNMO15061 1565 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 CYP7B1O75881 506 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 EPHB2P29323 1055 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 PRIM2P49643 509 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 PIGHQ14442 188 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 GOLPH3LQ9H4A5 285 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 RRP15Q9Y3B9 282 aaKnown RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 AKAP10O43572 662 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 HLA-DRAP01903 254 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 ENO3P13929 434 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 PLA2G4AP47712 749 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 RPS7P62081 194 aaKnown RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 USP13Q92995 863 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 TAAR1Q96RJ0 339 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 PDXKO00764 312 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 TBC1D4O60343 1298 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 ATP5HO75947 161 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 ENO1P06733 434 aaKnown RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 SLC2A3P11169 496 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 PCNAP12004 261 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 OXCT1P55809 520 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 AP1ARQ63HQ0 302 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 GPAT2Q6NUI2 795 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 DEFB132Q7Z7B7 95 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 HERC6Q8IVU3 1022 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 SRBD1Q8N5C6 995 aaKnown RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 MXRA8Q9BRK3 442 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 PAPOLBQ9NRJ5 636 aaKnown RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 UBQLN1Q9UMX0 589 aaKnown RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 DYRK1BQ9Y463 629 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 ADGRL2O95490 1459 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 NCF1BA6NI72 391 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 NCF1CA8MVU1 366 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 M0QYT0 321 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 NCF1P14598 390 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 ACO1P21399 889 aaKnown RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 GTF2H1P32780 548 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 ERFP50548 548 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 NEK2P51955 445 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 GUF1Q8N442 669 aaKnown RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 DDIT4Q9NX09 232 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 NCAPD2Q15021 1401 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 TRIM16O95361 564 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 BTNL9Q6UXG8 535 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 SIX5Q8N196 739 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 MAGED4Q96JG8 741 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 KRCC1Q9NPI7 259 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-212ENST00000491769 APEX2Q9UBZ4 518 aa13.69□□□□□ -0.22
COL6A3-212ENST00000491769 RASSF10A6NK89 507 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 EVPLLA8MZ36 301 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 RGL2O15211 777 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 SLC16A3O15427 465 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 WBP4O75554 376 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 VTNP04004 478 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 EFEMP1Q12805 493 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 FBXO16Q8IX29 292 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 SETD1BQ9UPS6 1966 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 FAM187AA6NFU0 413 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 TOB2Q14106 344 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 SLC15A2Q16348 729 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 ATL2Q8NHH9 583 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 SPATA18Q8TC71 538 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 MRPL1Q9BYD6 325 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 EXOSC4Q9NPD3 245 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 NYAP2Q9P242 653 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 NPEPPSP55786 919 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 KDSRQ06136 332 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 CPB2Q96IY4 423 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 FAM118BQ9BPY3 351 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 EXO5Q9H790 373 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 NSMCE4AQ9NXX6 385 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 LNPEPQ9UIQ6 1025 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 TUBE1Q9UJT0 475 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 CDYLQ9Y232 598 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 NR2E3Q9Y5X4 410 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 ATP6V1C1P21283 382 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 RPL10AP62906 217 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 BTG3Q14201 252 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 RARS2Q5T160 578 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 HHIPL2Q6UWX4 724 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 ITIH5Q86UX2 942 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 MB21D2Q8IYB1 491 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 PI4K2AQ9BTU6 479 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 RIC8BQ9NVN3 520 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 EXTL3O43909 919 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 PDHA1P08559 390 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 SYTL1Q8IYJ3 562 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms