RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 JUPP14923 745 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 ZFXP17010 805 aaPredicted RBP4.05□□□□□ -1.76
CPSF3-205ENST00000489629 CHRM3P20309 590 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 DRD4P21917 467 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 SSBP2P81877 361 aaPredicted RBP4.05□□□□□ -1.76
CPSF3-205ENST00000489629 FAM153CQ494X1 144 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 VPS53Q5VIR6 699 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 KIAA1614Q5VZ46 1190 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 HEATR3Q7Z4Q2 680 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 USP37Q86T82 979 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 CAMKK1Q8N5S9 505 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 SEMA6DQ8NFY4 1073 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 FAM136AQ96C01 138 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 ZNF778Q96MU6 729 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 SLAMF7Q9NQ25 335 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 FLRT1Q9NZU1 646 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 NR2E3Q9Y5X4 410 aa4.05□□□□□ -1.76
CPSF3-205ENST00000489629 POU2F2P09086 479 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 TYRP14679 529 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 ITGALP20701 1170 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 CCND1P24385 295 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 CD6P30203 668 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 RECQLP46063 649 aaPredicted RBP4.04□□□□□ -1.76
CPSF3-205ENST00000489629 GCLCP48506 637 aaPredicted RBP4.04□□□□□ -1.76
CPSF3-205ENST00000489629 CCT8P50990 548 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 ZNF81P51508 661 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 MAP2K6P52564 334 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 EXOSC10Q01780 885 aaKnown RBP4.04□□□□□ -1.76
CPSF3-205ENST00000489629 BMPR2Q13873 1038 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 TBCCQ15814 346 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 TMEM240Q5SV17 173 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 THEMIS2Q5TEJ8 643 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 ZNF782Q6ZMW2 699 aaPredicted RBP4.04□□□□□ -1.76
CPSF3-205ENST00000489629 USP45Q70EL2 814 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 ZNF551Q7Z340 670 aaPredicted RBP4.04□□□□□ -1.76
CPSF3-205ENST00000489629 PPP1R3BQ86XI6 285 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 SCARB1Q8WTV0 552 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 SMG7Q92540 1137 aaKnown RBP4.04□□□□□ -1.76
CPSF3-205ENST00000489629 DDX17Q92841 729 aaKnown RBP4.04□□□□□ -1.76
CPSF3-205ENST00000489629 RGMAQ96B86 450 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 REPS1Q96D71 796 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 SIK2Q9H0K1 926 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 ABCF2Q9UG63 623 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 PADI4Q9UM07 663 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 RAD54BQ9Y620 910 aa4.04□□□□□ -1.76
CPSF3-205ENST00000489629 WDR91A4D1P6 747 aa4.03□□□□□ -1.76
CPSF3-205ENST00000489629 AHSGP02765 367 aa4.03□□□□□ -1.76
CPSF3-205ENST00000489629 HNRNPCP07910 306 aaKnown RBP eCLIP4.03□□□□□ -1.76
CPSF3-205ENST00000489629 SLC10A2Q12908 348 aaPredicted RBP4.03□□□□□ -1.76
CPSF3-205ENST00000489629 LLGL1Q15334 1064 aa4.03□□□□□ -1.76
CPSF3-205ENST00000489629 PLAC9Q5JTB6 97 aa4.03□□□□□ -1.76
CPSF3-205ENST00000489629 DTX2Q86UW9 622 aa4.03□□□□□ -1.76
CPSF3-205ENST00000489629 KLHDC4Q8TBB5 520 aa4.03□□□□□ -1.76
CPSF3-205ENST00000489629 TNPO1Q92973 898 aaKnown RBP4.03□□□□□ -1.76
CPSF3-205ENST00000489629 SMAD5Q99717 465 aaKnown RBP4.03□□□□□ -1.76
CPSF3-205ENST00000489629 SLC29A3Q9BZD2 475 aa4.03□□□□□ -1.76
CPSF3-205ENST00000489629 ARHGEF3Q9NR81 526 aa4.03□□□□□ -1.76
CPSF3-205ENST00000489629 ZNF70Q9UC06 446 aaPredicted RBP4.03□□□□□ -1.76
CPSF3-205ENST00000489629 FEZ2Q9UHY8 353 aaPredicted RBP4.03□□□□□ -1.76
CPSF3-205ENST00000489629 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 TARM1B6A8C7 271 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 M0QYG6 137 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 ZNF213O14771 459 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 DCLK1O15075 740 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 PPM1DO15297 605 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 DNAJB5O75953 348 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 FTLP02792 175 aaPredicted RBP4.02□□□□□ -1.77
CPSF3-205ENST00000489629 PDHA1P08559 390 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 EBLN1P0CF75 366 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 ZNF134P52741 427 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 NKX6-1P78426 367 aaPredicted RBP4.02□□□□□ -1.77
CPSF3-205ENST00000489629 PROSER3Q2NL68 480 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 LCE1AQ5T7P2 110 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 FAM160B1Q5W0V3 765 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 SUMO4Q6EEV6 95 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 ZNF425Q6IV72 752 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 ANKRD16Q6P6B7 361 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 CPA6Q8N4T0 437 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 FAM46DQ8NEK8 389 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 ATRIPQ8WXE1 791 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 FAM167AQ96KS9 214 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 NELL2Q99435 816 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.02□□□□□ -1.77
CPSF3-205ENST00000489629 LMBRD1Q9NUN5 540 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 PNPOQ9NVS9 261 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 HESX1Q9UBX0 185 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 PCDHA1Q9Y5I3 950 aa4.02□□□□□ -1.77
CPSF3-205ENST00000489629 FNDC1Q4ZHG4 1894 aaPredicted RBP4.01□□□□□ -1.77
CPSF3-205ENST00000489629 H0YIZ8 118 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 DTNBO60941 627 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 NXPH3O95157 252 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 GNAI2P04899 355 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 FAM163BP0C2L3 166 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 NHLRC4P0CG21 123 aaPredicted RBP4.01□□□□□ -1.77
CPSF3-205ENST00000489629 PIM1P11309 404 aaPredicted RBP4.01□□□□□ -1.77
CPSF3-205ENST00000489629 EIF2B5Q13144 721 aaKnown RBP4.01□□□□□ -1.77
CPSF3-205ENST00000489629 ZNF618Q5T7W0 954 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 TEDDM1Q5T9Z0 273 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 EMC10Q5UCC4 262 aa4.01□□□□□ -1.77
CPSF3-205ENST00000489629 CEP85Q6P2H3 762 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms