RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 EFCAB14O75071 495 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 BAIAP3O94812 1187 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 DDHD2O94830 711 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 KIF4AO95239 1232 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 FTLP02792 175 aaPredicted RBP12.21□□□□□ -0.45
C9orf3-220ENST00000489318 CYP1A2P05177 515 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 MYBL1P10243 752 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 NSFP46459 744 aaKnown RBP12.21□□□□□ -0.45
C9orf3-220ENST00000489318 GSCP56915 257 aaPredicted RBP12.21□□□□□ -0.45
C9orf3-220ENST00000489318 C1QBPQ07021 282 aaKnown RBP12.21□□□□□ -0.45
C9orf3-220ENST00000489318 PTP4A2Q12974 167 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 IKBKEQ14164 716 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 CNGA2Q16280 664 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 SGO2Q562F6 1265 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 DCLRE1AQ6PJP8 1040 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 LCLAT1Q6UWP7 414 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 SYT10Q6XYQ8 523 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.21□□□□□ -0.45
C9orf3-220ENST00000489318 DEFB128Q7Z7B8 93 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 OSTM1Q86WC4 334 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 ZNF280BQ86YH2 543 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 RHOT2Q8IXI1 618 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 SLC35F6Q8N357 371 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 CYFIP2Q96F07 1278 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 SUSD3Q96L08 255 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 SENP8Q96LD8 212 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 NOX5Q96PH1 765 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 TMEM175Q9BSA9 504 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 THAP2Q9H0W7 228 aa12.21□□□□□ -0.45
C9orf3-220ENST00000489318 AVENQ9NQS1 362 aaPredicted RBP12.21□□□□□ -0.45
C9orf3-220ENST00000489318 ARHGEF37A1IGU5 675 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 A8MXQ7 604 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 TMCO5BA8MYB1 307 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 ODC1P11926 461 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 CD19P15391 556 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 RAG1P15918 1043 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 EN2P19622 333 aaPredicted RBP12.2□□□□□ -0.46
C9orf3-220ENST00000489318 TYMPP19971 482 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 MMP8P22894 467 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 IGFBP6P24592 240 aaPredicted RBP12.2□□□□□ -0.46
C9orf3-220ENST00000489318 GPC5P78333 572 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 ORC1Q13415 861 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 IFI16Q16666 785 aaKnown RBP12.2□□□□□ -0.46
C9orf3-220ENST00000489318 PKDCCQ504Y2 493 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 TIGD5Q53EQ6 642 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 ZNF569Q5MCW4 686 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 NAA35Q5VZE5 725 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 DNAAF5Q86Y56 855 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 MCOLN2Q8IZK6 566 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 ABI1Q8IZP0 508 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 LRRC43Q8N309 656 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 TMEM199Q8N511 208 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 WDTC1Q8N5D0 677 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 LRRC57Q8N9N7 239 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 TMEM35BQ8NCS4 154 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 OR6B3Q8NGW1 331 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 KIF18AQ8NI77 898 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 ARHGEF26Q96DR7 871 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 ALS2CR12Q96Q35 445 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 DNAI2Q9GZS0 605 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 PRDM5Q9NQX1 630 aaPredicted RBP12.2□□□□□ -0.46
C9orf3-220ENST00000489318 DNAI1Q9UI46 699 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 DSEQ9UL01 958 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 LRFN2Q9ULH4 789 aa12.2□□□□□ -0.46
C9orf3-220ENST00000489318 COL4A4P53420 1690 aaPredicted RBP12.19□□□□□ -0.46
C9orf3-220ENST00000489318 DGKIO75912 1065 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 B3GAT3O94766 335 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 MICAL2O94851 1124 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 MOCS3O95396 460 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 ITGB1P05556 798 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 SETSIPP0DME0 302 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 CSF2RAP15509 400 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 ABCB4P21439 1286 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 GNL1P36915 607 aaPredicted RBP12.19□□□□□ -0.46
C9orf3-220ENST00000489318 GPD2P43304 727 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 LHX1P48742 406 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 DNTTIP2Q5QJE6 756 aaKnown RBP12.19□□□□□ -0.46
C9orf3-220ENST00000489318 WSCD1Q658N2 575 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.19□□□□□ -0.46
C9orf3-220ENST00000489318 SLFN11Q7Z7L1 901 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 ACOT1Q86TX2 421 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 PASD1Q8IV76 773 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 C1orf131Q8NDD1 294 aaKnown RBP12.19□□□□□ -0.46
C9orf3-220ENST00000489318 TPCN2Q8NHX9 752 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 TOP1MTQ969P6 601 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 ZNF653Q96CK0 615 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 TNIP3Q96KP6 325 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 PDCL3Q9H2J4 239 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 SNX25Q9H3E2 840 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 DPEP3Q9H4B8 488 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 NRDE2Q9H7Z3 1164 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 IL23AQ9NPF7 189 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 UVRAGQ9P2Y5 699 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 PUF60Q9UHX1 559 aaKnown RBP12.19□□□□□ -0.46
C9orf3-220ENST00000489318 TSPAN16Q9UKR8 245 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 PCDHB8Q9UN66 801 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 COG5Q9UP83 839 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 CEP83Q9Y592 693 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 PAXBP1Q9Y5B6 917 aa12.19□□□□□ -0.46
C9orf3-220ENST00000489318 TCRBV5S1A1TA0A578 114 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms