RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	KHDC1L	Q5JSQ8	128 aa		6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	VPS53	Q5VIR6	699 aa		6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	JPH3	Q8WXH2	748 aa	Predicted RBP	6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	CDK5RAP3	Q96JB5	506 aa		6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	FAM167A	Q96KS9	214 aa		6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	RHOBTB2	Q9BYZ6	727 aa		6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	SEMA4G	Q9NTN9	838 aa		6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	TYW1	Q9NV66	732 aa	Known RBP	6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	STAP2	Q9UGK3	403 aa		6.11	□□□□□ -1.43
PTPN4-212	ENST00000488896	SPATA31A3	Q5VYP0	1347 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	ADGRA2	Q96PE1	1338 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	CCDC151	A5D8V7	595 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	PDHA1	P08559	390 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	NR2F6	P10588	404 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	ZNF37A	P17032	561 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	GCLC	P48506	637 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	TOB1	P50616	345 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	SOX8	P57073	446 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	NXPH1	P58417	271 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	NKX6-1	P78426	367 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	EIF2B5	Q13144	721 aa	Known RBP	6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	CCDC142	Q17RM4	750 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	FAM160B1	Q5W0V3	765 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	SYCE2	Q6PIF2	218 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	GRASP	Q7Z6J2	395 aa	Predicted RBP	6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	TPH2	Q8IWU9	490 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	NELL1	Q92832	810 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	AMBRA1	Q9C0C7	1298 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	SARS2	Q9NP81	518 aa	Known RBP	6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	ADARB2	Q9NS39	739 aa	Known RBP	6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	KLC4	Q9NSK0	619 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	STXBP5L	Q9Y2K9	1186 aa		6.1	□□□□□ -1.43
PTPN4-212	ENST00000488896	AKAP10	O43572	662 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	C1QL1	O75973	258 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	UNC5C	O95185	931 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	C1R	P00736	705 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	MYB	P10242	640 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	C21orf58	P58505	322 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	ATAT1	Q5SQI0	421 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	TMEM108	Q6UXF1	575 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	PPP1R32	Q7Z5V6	425 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	AMIGO2	Q86SJ2	522 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	PLBD2	Q8NHP8	589 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	KLHDC4	Q8TBB5	520 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	DDX17	Q92841	729 aa	Known RBP	6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	FKBP10	Q96AY3	582 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	MTFMT	Q96DP5	389 aa	Known RBP	6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	C1GALT1C1	Q96EU7	318 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	UROC1	Q96N76	676 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	SLC46A1	Q96NT5	459 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	RTFDC1	Q9BY42	306 aa	Predicted RBP	6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	DKK3	Q9UBP4	350 aa		6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	6.09	□□□□□ -1.43
PTPN4-212	ENST00000488896	PIM1	P11309	404 aa	Predicted RBP	6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	TBCC	Q15814	346 aa		6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	KRTAP5-3	Q6L8H2	238 aa		6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	LAYN	Q6UX15	382 aa		6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	RASAL3	Q86YV0	1011 aa		6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	DIS3L	Q8TF46	1054 aa	Known RBP	6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	FAM136A	Q96C01	138 aa		6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	HAPLN3	Q96S86	360 aa		6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	OSBPL9	Q96SU4	736 aa		6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	SLC12A5	Q9H2X9	1139 aa		6.08	□□□□□ -1.44
PTPN4-212	ENST00000488896	PPM1D	O15297	605 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	SOAT2	O75908	522 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	DNAJB5	O75953	348 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	EBLN1	P0CF75	366 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	HSPA6	P17066	643 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	NCL	P19338	710 aa	Known RBP	6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	GPD1	P21695	349 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	ZNF134	P52741	427 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	FAM153C	Q494X1	144 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	PPP1R35	Q8TAP8	253 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	ZIM2	Q9NZV7	527 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	HESX1	Q9UBX0	185 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	PNMA8B	Q9ULN7	279 aa	Predicted RBP	6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	ENTPD2	Q9Y5L3	495 aa		6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	POLR2A	P24928	1970 aa	Known RBP	6.07	□□□□□ -1.44
PTPN4-212	ENST00000488896	LOC105371045	A0A1W2PR82	267 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	WDR27	A2RRH5	827 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	URI1	O94763	535 aa	Predicted RBP	6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	TTLL1	O95922	423 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	GRP	P07492	148 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	FBL	P22087	321 aa	Known RBP	6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	HTR1B	P28222	390 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	TCF15	Q12870	199 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	LONRF3	Q496Y0	759 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	DENND1C	Q8IV53	801 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	VOPP1	Q96AW1	172 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	PBK	Q96KB5	322 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	NMRK2	Q9NPI5	230 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	SERHL	Q9NQF3	203 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	CNNM1	Q9NRU3	951 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	ARPP21	Q9UBL0	812 aa	Predicted RBP	6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	SERTAD3	Q9UJW9	196 aa		6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	NOB1	Q9ULX3	412 aa	Known RBP	6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	6.06	□□□□□ -1.44
PTPN4-212	ENST00000488896	E2F8	A0AVK6	867 aa		6.05	□□□□□ -1.44
PTPN4-212	ENST00000488896	DCLK1	O15075	740 aa		6.05	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms