RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 CNTN3Q9P232 1028 aa10.09□□□□□ -0.79
COL17A1-207ENST00000488320 MBD1Q9UIS9 605 aaPredicted RBP10.09□□□□□ -0.79
COL17A1-207ENST00000488320 ZMYM5Q9UJ78 669 aa10.09□□□□□ -0.79
COL17A1-207ENST00000488320 PI4KAP42356 2102 aa10.09□□□□□ -0.79
COL17A1-207ENST00000488320 UPK3BL1B0FP48 263 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 UPK3BL2E5RIL1 263 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 M0QZQ0 153 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 SPATA31C1P0DKV0 1188 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 DPP6P42658 865 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 CDR1P51861 262 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 FAM193AP78312 1265 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 NR1H3Q13133 447 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 HNRNPDQ14103 355 aaKnown RBP10.08□□□□□ -0.8
COL17A1-207ENST00000488320 MYBPC2Q14324 1141 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 EARS2Q5JPH6 523 aaKnown RBP10.08□□□□□ -0.8
COL17A1-207ENST00000488320 OVOS1Q6IE37 1185 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 SLC23A3Q6PIS1 610 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 RAB44Q7Z6P3 723 aaPredicted RBP10.08□□□□□ -0.8
COL17A1-207ENST00000488320 PGBD3Q8N328 593 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 ADAM32Q8TC27 787 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 USP13Q92995 863 aaPredicted RBP10.08□□□□□ -0.8
COL17A1-207ENST00000488320 SPACA7Q96KW9 195 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 MRPL4Q9BYD3 311 aaKnown RBP10.08□□□□□ -0.8
COL17A1-207ENST00000488320 ECT2Q9H8V3 914 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 KIF9Q9HAQ2 790 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 BRMS1Q9HCU9 246 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 TMEM74BQ9NUR3 256 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 DUS2Q9NX74 493 aaKnown RBP10.08□□□□□ -0.8
COL17A1-207ENST00000488320 TBX20Q9UMR3 447 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 SLC6A14Q9UN76 642 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 CCL26Q9Y258 94 aa10.08□□□□□ -0.8
COL17A1-207ENST00000488320 FAM205CA6NFA0 338 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 TNFRSF10BO14763 440 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 NEMFO60524 1076 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 MED24O75448 989 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 CDKL5O76039 1030 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 MCF2P10911 925 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 DDX6P26196 483 aaKnown RBP eCLIP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 KRT2P35908 639 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 MATR3P43243 847 aaKnown RBP eCLIP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 IFNAR2P48551 515 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 PEX3P56589 373 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 EVCP57679 992 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 GFPT1Q06210 699 aaPredicted RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 SPAG1Q07617 926 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 DMP1Q13316 513 aaPredicted RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 BYSLQ13895 437 aaKnown RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 TRIP6Q15654 476 aaKnown RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 LYSMD4Q5XG99 296 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 LMBRD2Q68DH5 695 aaPredicted RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 TXNDC8Q6A555 127 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 CCDC33Q8N5R6 958 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 TTC9BQ8N6N2 239 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 PNPLA1Q8N8W4 532 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 SPRYD3Q8NCJ5 442 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 ERMNQ8TAM6 284 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 CEP76Q8TAP6 659 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 MDM1Q8TC05 714 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 RLN3Q8WXF3 142 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 MRPS31Q92665 395 aaKnown RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 KIFAP3Q92845 792 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 ZNF274Q96GC6 653 aaPredicted RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 CNOT6LQ96LI5 555 aaKnown RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 TARS2Q9BW92 718 aaKnown RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 FSCN3Q9NQT6 498 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 GJB4Q9NTQ9 266 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 BCCIPQ9P287 314 aaKnown RBP eCLIP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 TUBGCP4Q9UGJ1 667 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 RAXQ9Y2V3 346 aa10.07□□□□□ -0.8
COL17A1-207ENST00000488320 ATXN2Q99700 1313 aaKnown RBP10.07□□□□□ -0.8
COL17A1-207ENST00000488320 SHROOM3Q8TF72 1996 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 MYO16Q9Y6X6 1858 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 GON4LQ3T8J9 2241 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 ITPR1Q14643 2758 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 LARGE1O95461 756 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 PTGER3P43115 390 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 NR5A1Q13285 461 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 TOB2Q14106 344 aaPredicted RBP10.06□□□□□ -0.8
COL17A1-207ENST00000488320 MTF1Q14872 753 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 DUOXA1Q1HG43 343 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 SLC10A6Q3KNW5 377 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 SLC39A12Q504Y0 691 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 SEZ6Q53EL9 994 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 MPZL3Q6UWV2 235 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 CCNI2Q6ZMN8 369 aaPredicted RBP10.06□□□□□ -0.8
COL17A1-207ENST00000488320 RASSF3Q86WH2 238 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 MDGA1Q8NFP4 955 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 EZH1Q92800 747 aaPredicted RBP10.06□□□□□ -0.8
COL17A1-207ENST00000488320 KCNB2Q92953 911 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 ATP2A3Q93084 1043 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 ZBTB45Q96K62 511 aaPredicted RBP10.06□□□□□ -0.8
COL17A1-207ENST00000488320 TMEM134Q9H6X4 195 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 IL21Q9HBE4 155 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 PTPRHQ9HD43 1115 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 HSFX1Q9UBD0 423 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 MAGED2Q9UNF1 606 aaPredicted RBP10.06□□□□□ -0.8
COL17A1-207ENST00000488320 STK24Q9Y6E0 443 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 FLNBO75369 2602 aaKnown RBP10.06□□□□□ -0.8
COL17A1-207ENST00000488320 PHLPP2Q6ZVD8 1323 aa10.06□□□□□ -0.8
COL17A1-207ENST00000488320 CEP192Q8TEP8 1941 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms