RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MGAT5Q09328 741 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 TARBP2Q15633 366 aaKnown RBP18.94■□□□□ 0.62
VIM-206ENST00000487938 PKN2Q16513 984 aaKnown RBP18.94■□□□□ 0.62
VIM-206ENST00000487938 TFDP3Q5H9I0 405 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 ZBED8Q8IZ13 594 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 KIF2BQ8N4N8 673 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 TMEM35BQ8NCS4 154 aa18.94■□□□□ 0.62
VIM-206ENST00000487938 FAM47DPA6NHR8 397 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 FAM189A1O60320 539 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 ABHD2P08910 425 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 SMTNL2Q2TAL5 461 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 PPP1R2P3Q6NXS1 205 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 PPP1R21Q6ZMI0 780 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 TRABD2AQ86V40 505 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 WDR49Q8IV35 697 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 ANKMY2Q8IV38 441 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 TAB3Q8N5C8 712 aaPredicted RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 PITPNM3Q9BZ71 974 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 ZWILCHQ9H900 591 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 TJP2Q9UDY2 1190 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 MSCO60682 206 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 FARP2O94887 1054 aaPredicted RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 NQO1P15559 274 aaKnown RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 RFC5P40937 340 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 CDKN2BP42772 138 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 ALDH5A1P51649 535 aaPredicted RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 VCPP55072 806 aaKnown RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 COPS2P61201 443 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 BNIP1Q12981 228 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 TRPC3Q13507 836 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 OASLQ15646 514 aaKnown RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 PREPLQ4J6C6 727 aaPredicted RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 KCNT1Q5JUK3 1230 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 DRICH1Q6PGQ1 229 aaPredicted RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 CDR2LQ86X02 465 aaPredicted RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 C4orf33Q8N1A6 199 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 TMEM130Q8N3G9 435 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 LRRC71Q8N4P6 559 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 CCHCR1Q8TD31 782 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 KCNN1Q92952 543 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 FOXP3Q9BZS1 431 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 TRIM33Q9UPN9 1127 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 DRG1Q9Y295 367 aaKnown RBP18.93■□□□□ 0.62
VIM-206ENST00000487938 AFG3L2Q9Y4W6 797 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 ACTL7BQ9Y614 415 aa18.93■□□□□ 0.62
VIM-206ENST00000487938 CFAP73A6NFT4 308 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 IGF2BP3O00425 579 aaKnown RBP eCLIP18.92■□□□□ 0.62
VIM-206ENST00000487938 KRT15P19012 456 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 TCF7P36402 384 aaPredicted RBP18.92■□□□□ 0.62
VIM-206ENST00000487938 IL9RQ01113 521 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 GAD2Q05329 585 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 MCL1Q07820 350 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 PDIA2Q13087 525 aaKnown RBP18.92■□□□□ 0.62
VIM-206ENST00000487938 MTFR1Q15390 333 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 DUOXA2Q1HG44 320 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 SGSM1Q2NKQ1 1148 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 PPP1R15BQ5SWA1 713 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 DNERQ8NFT8 737 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 SPOCK2Q92563 424 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 NIF3L1Q9GZT8 377 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 TRABDQ9H4I3 376 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 LCTP09848 1927 aa18.92■□□□□ 0.62
VIM-206ENST00000487938 MAFO75444 373 aaPredicted RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 TOM1L1O75674 476 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 PIAS1O75925 651 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 RFC1P35251 1148 aaPredicted RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 MKRN3Q13064 507 aaKnown RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 DNAJC3Q13217 504 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 PIGHQ14442 188 aaPredicted RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 LY6KQ17RY6 165 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 WLSQ5T9L3 541 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 RNASEH2BQ5TBB1 312 aaKnown RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 LRRC38Q5VT99 294 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 DENND1BQ6P3S1 775 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 THNSL1Q8IYQ7 743 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 GPATCH11Q8N954 259 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 KLRG1Q96E93 195 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 ACO2Q99798 780 aaKnown RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 MRPL4Q9BYD3 311 aaKnown RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 KLHL14Q9P2G3 628 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 NXF1Q9UBU9 619 aaKnown RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 LSM8O95777 96 aaKnown RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 MAP2K2P36507 400 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 MTM1Q13496 603 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 MORF4L2Q15014 288 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 ZPBP2Q6X784 338 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 CEP128Q6ZU80 1094 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 ECHDC2Q86YB7 292 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 RIBC1Q8N443 379 aaPredicted RBP18.91■□□□□ 0.62
VIM-206ENST00000487938 RNF149Q8NC42 400 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 KLHL29Q96CT2 875 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 RXFP1Q9HBX9 757 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 POLIQ9UNA4 740 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 AGTPBP1Q9UPW5 1226 aa18.91■□□□□ 0.62
VIM-206ENST00000487938 A0A1W2PPM1 405 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 ITGBL1O95965 494 aaPredicted RBP18.9■□□□□ 0.62
VIM-206ENST00000487938 CD19P15391 556 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 PSMA2P25787 234 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 RAP1GAPP47736 663 aa18.9■□□□□ 0.62
VIM-206ENST00000487938 HIRAP54198 1017 aaPredicted RBP18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms