RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 RPL7AP62424 266 aaKnown RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 PWP2Q15269 919 aaKnown RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 TADA2BQ86TJ2 420 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 WDR49Q8IV35 697 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 CAVIN3Q969G5 261 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 PWWP2AQ96N64 755 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 PARK7Q99497 189 aaKnown RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 XPNPEP1Q9NQW7 623 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 SNTG2Q9NY99 539 aa13.92□□□□□ -0.18
HMGN1-216ENST00000486741 KLHL8Q9P2G9 620 aaPredicted RBP13.92□□□□□ -0.18
HMGN1-216ENST00000486741 TMEM120BA0PK00 339 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 LACTBL1A8MY62 500 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 IL18RAPO95256 599 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 SLC4A1P02730 911 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 FLT3P36888 993 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 SESN2P58004 480 aaPredicted RBP13.91□□□□□ -0.18
HMGN1-216ENST00000486741 C11orf63Q6NUN7 778 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 MFSD7Q6UXD7 560 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 LRIG3Q6UXM1 1119 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 BRSK2Q8IWQ3 736 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 CDC42EP4Q9H3Q1 356 aaKnown RBP13.91□□□□□ -0.18
HMGN1-216ENST00000486741 IFT122Q9HBG6 1241 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 ERVK-5Q9HDB9 667 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 NHSL1Q5SYE7 1610 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 UMODL1Q5DID0 1318 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 ZSCAN5DPP0CG00 497 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.91□□□□□ -0.18
HMGN1-216ENST00000486741 ATXN7L3BQ96GX2 97 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 TELO2Q9Y4R8 837 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 RBAK-RBAKDNI3L0D1 243 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 SESN3P58005 492 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 FSTL1Q12841 308 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 ASTE1Q2TB18 679 aaPredicted RBP13.91□□□□□ -0.18
HMGN1-216ENST00000486741 ZACNQ401N2 412 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 FOXR2Q6PJQ5 311 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 MTMR14Q8NCE2 650 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 CDKL2Q92772 493 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 SCYL1Q96KG9 808 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.91□□□□□ -0.18
HMGN1-216ENST00000486741 C4BP0C0L5 1744 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 ADAMTS7Q9UKP4 1686 aa13.91□□□□□ -0.18
HMGN1-216ENST00000486741 TCRBV7S2A1N4TA0A589 114 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 ACKR2O00590 384 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 CST3P01034 146 aaPredicted RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 GNAT1P11488 350 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 NOVP48745 357 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 PTPN11Q06124 597 aaPredicted RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 TTMPQ5BVD1 217 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 HEATR6Q6AI08 1181 aaKnown RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 JADE1Q6IE81 842 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 KDELC2Q7Z4H8 507 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 TMC3Q7Z5M5 1100 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 PCGF5Q86SE9 256 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 PRELID2Q8N945 189 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 XPO6Q96QU8 1125 aaKnown RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 PSD3Q9NYI0 1048 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 TPX2Q9ULW0 747 aaKnown RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 G3BP2Q9UN86 482 aaKnown RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 PCDHA3Q9Y5H8 950 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 MYH10P35580 1976 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 GCLCP48506 637 aaPredicted RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 FNTAP49354 379 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 SLC12A2P55011 1212 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 OTUD4Q01804 1114 aaKnown RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 TAP1Q03518 808 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 SPARCL1Q14515 664 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 DCAF6Q58WW2 860 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 RAPH1Q70E73 1250 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 APPL2Q8NEU8 664 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 TMBIM4Q9HC24 238 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 CCDC195A0A1B0GUA6 201 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 PIAS1O75925 651 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 FARP2O94887 1054 aaPredicted RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 LYPLA2O95372 231 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 LCA5LO95447 670 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 IFI35P80217 286 aaPredicted RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 ZNF844Q08AG5 666 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 PTGISQ16647 500 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 LBX2Q6XYB7 198 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 C3orf62Q6ZUJ4 267 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 KIAA0319LQ8IZA0 1049 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 ACTL9Q8TC94 416 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 DEPDC1BQ8WUY9 529 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 HES6Q96HZ4 224 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 DMAC2Q9NW81 257 aa13.9□□□□□ -0.18
HMGN1-216ENST00000486741 MRPL42Q9Y6G3 142 aaKnown RBP13.9□□□□□ -0.18
HMGN1-216ENST00000486741 NFICP08651 508 aa13.9□□□□□ -0.19
HMGN1-216ENST00000486741 SP2Q02086 613 aa13.9□□□□□ -0.19
HMGN1-216ENST00000486741 CELF3Q5SZQ8 465 aaKnown RBP13.9□□□□□ -0.19
HMGN1-216ENST00000486741 STMN2Q93045 179 aa13.9□□□□□ -0.19
HMGN1-216ENST00000486741 TRABDQ9H4I3 376 aa13.9□□□□□ -0.19
HMGN1-216ENST00000486741 FGFR1OP2Q9NVK5 253 aa13.9□□□□□ -0.19
HMGN1-216ENST00000486741 WDR35Q9P2L0 1181 aa13.9□□□□□ -0.19
HMGN1-216ENST00000486741 XPO7Q9UIA9 1087 aaKnown RBP13.9□□□□□ -0.19
HMGN1-216ENST00000486741 KITP10721 976 aa13.89□□□□□ -0.19
HMGN1-216ENST00000486741 GNL1P36915 607 aaPredicted RBP13.89□□□□□ -0.19
HMGN1-216ENST00000486741 HSPA9P38646 679 aaKnown RBP13.89□□□□□ -0.19
HMGN1-216ENST00000486741 PSMC4P43686 418 aa13.89□□□□□ -0.19
HMGN1-216ENST00000486741 NDST1P52848 882 aa13.89□□□□□ -0.19
HMGN1-216ENST00000486741 ZNF280AP59817 542 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms