RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RFX1P22670 979 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 GRAMD4Q6IC98 578 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 EME1Q96AY2 570 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 MIS12Q9H081 205 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 PCDHB2Q9Y5E7 798 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 USP1O94782 785 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 HLA-DRAP01903 254 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 GARSP41250 739 aaKnown RBP14.16□□□□□ -0.14
USP42-206ENST00000479544 SLC1A1P43005 524 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 ROR1Q01973 937 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 PPP3CAQ08209 521 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 KCTD21Q4G0X4 260 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 HABP4Q5JVS0 413 aaKnown RBP14.16□□□□□ -0.14
USP42-206ENST00000479544 MIS18BP1Q6P0N0 1132 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 SYDE1Q6ZW31 735 aaPredicted RBP14.16□□□□□ -0.14
USP42-206ENST00000479544 TMEM143Q96AN5 459 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 DENND2DQ9H6A0 471 aaPredicted RBP14.16□□□□□ -0.14
USP42-206ENST00000479544 FNDC3AQ9Y2H6 1198 aaKnown RBP14.16□□□□□ -0.14
USP42-206ENST00000479544 TNS2Q63HR2 1409 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 FAM237BA0A1B0GVD1 139 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 OCRLQ01968 901 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 BNIP1Q12981 228 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 PRPSAP1Q14558 356 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 UCMAQ8WVF2 138 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 MPP4Q96JB8 637 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 DCLK3Q9C098 648 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 RIOX1Q9H6W3 641 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 MON2Q7Z3U7 1717 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 ARHGAP10A1A4S6 786 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 CES2O00748 559 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 EML3Q32P44 896 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 DNAL1Q4LDG9 190 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 RARS2Q5T160 578 aaKnown RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 C6orf89Q6UWU4 347 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 RNF135Q8IUD6 432 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 LRRC57Q8N9N7 239 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 DCAF4Q8WV16 495 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 PRR12Q9ULL5 1215 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 GOLGA8QA0A0J9YX86 632 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 GOLGA8OA6NCC3 632 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 SRRM3A6NNA2 597 aaPredicted RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 GOLGA8NF8WBI6 632 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 PRKCIP41743 596 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 MRPS9P82933 396 aaKnown RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 ROR2Q01974 943 aaKnown RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 ANO4Q32M45 955 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 CC2D2BQ6DHV5 1058 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 EMC1Q8N766 993 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 ACTL9Q8TC94 416 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 OPTNQ96CV9 577 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 THAP11Q96EK4 314 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 ZNF570Q96NI8 536 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 ZNF184Q99676 751 aaPredicted RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 GTSE1Q9NYZ3 720 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 AGO2Q9UKV8 859 aaKnown RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 COG5Q9UP83 839 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 PEX1O43933 1283 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 HNRNPCL1O60812 293 aaKnown RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 ATP6V1C1P21283 382 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 RPS6P62753 249 aaKnown RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 RCOR2Q8IZ40 523 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 EIF1ADQ8N9N8 165 aaKnown RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 CLPTM1LQ96KA5 538 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 GCNAQ96QF7 691 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 PAGR1Q9BTK6 254 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 ZMYND8Q9ULU4 1186 aaPredicted RBP14.15□□□□□ -0.14
USP42-206ENST00000479544 AURKCQ9UQB9 309 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 GJA3Q9Y6H8 435 aa14.15□□□□□ -0.14
USP42-206ENST00000479544 GYS1P13807 737 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 RGS7P49802 495 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 BLMHQ13867 455 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 WASHC2DQ5SRD0 308 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 ZBTB8OSQ8IWT0 167 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 TTC13Q8NBP0 860 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 CCDC138Q96M89 665 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 KCTD10Q9H3F6 313 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 NKX1-2Q9UD57 310 aaPredicted RBP14.14□□□□□ -0.15
USP42-206ENST00000479544 AJAP1Q9UKB5 411 aaPredicted RBP14.14□□□□□ -0.15
USP42-206ENST00000479544 KAT6AQ92794 2004 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 ZMPSTE24O75844 475 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 PSMG1O95456 288 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 GTF2H1P32780 548 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 OTUD4Q01804 1114 aaKnown RBP14.14□□□□□ -0.15
USP42-206ENST00000479544 POU5F1BQ06416 359 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 USP4Q13107 963 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 ZNF268Q14587 947 aaPredicted RBP14.14□□□□□ -0.15
USP42-206ENST00000479544 ACAP1Q15027 740 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 KHDC1Q4VXA5 237 aaKnown RBP14.14□□□□□ -0.15
USP42-206ENST00000479544 WLSQ5T9L3 541 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 IRGCQ6NXR0 463 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 MFSD7Q6UXD7 560 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 LDHDQ86WU2 507 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 CYP4X1Q8N118 509 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 GPD1LQ8N335 351 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 ZNF341Q9BYN7 854 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 PCDHA3Q9Y5H8 950 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 RGPD8O14715 1765 aaPredicted RBP14.14□□□□□ -0.15
USP42-206ENST00000479544 C21orf2O43822 256 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 CALB1P05937 261 aa14.14□□□□□ -0.15
USP42-206ENST00000479544 MCF2P10911 925 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms