RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 KCTD10Q9H3F6 313 aa19.28■□□□□ 0.68
UPF3A-203ENST00000474056 TMLHEQ9NVH6 421 aa19.28■□□□□ 0.68
UPF3A-203ENST00000474056 DDX43Q9NXZ2 648 aaKnown RBP19.28■□□□□ 0.68
UPF3A-203ENST00000474056 HSFX1Q9UBD0 423 aa19.28■□□□□ 0.68
UPF3A-203ENST00000474056 HCRTO43612 131 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 EXOC3O60645 756 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 ATF6P18850 670 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 FCARP24071 287 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 ACAT1P24752 427 aaKnown RBP19.27■□□□□ 0.68
UPF3A-203ENST00000474056 MYO1EQ12965 1108 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 SOWAHAQ2M3V2 549 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 MGAT5BQ3V5L5 792 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 DCP1BQ8IZD4 617 aaKnown RBP19.27■□□□□ 0.68
UPF3A-203ENST00000474056 ADGRF2Q8IZF7 708 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 TMEM86AQ8N2M4 240 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 TOP6BLQ8N6T0 577 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 HPDLQ96IR7 371 aa19.27■□□□□ 0.68
UPF3A-203ENST00000474056 ZNF334Q9HCZ1 680 aaPredicted RBP19.27■□□□□ 0.68
UPF3A-203ENST00000474056 ABI2Q9NYB9 513 aaPredicted RBP19.27■□□□□ 0.68
UPF3A-203ENST00000474056 R3HCC1Q9Y3T6 440 aaKnown RBP19.27■□□□□ 0.68
UPF3A-203ENST00000474056 CACNA1HO95180 2353 aa19.27■□□□□ 0.67
UPF3A-203ENST00000474056 COL4A2P08572 1712 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 PRPF40AO75400 957 aaKnown RBP19.26■□□□□ 0.67
UPF3A-203ENST00000474056 ECI2O75521 394 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 RHOBTB3O94955 611 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 CST3P01034 146 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-203ENST00000474056 TUFMP49411 452 aaKnown RBP19.26■□□□□ 0.67
UPF3A-203ENST00000474056 CASP4P49662 377 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 TSPY1Q01534 308 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 SMARCB1Q12824 385 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 TEAD2Q15562 447 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 CCDC142Q17RM4 750 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 INTS6LQ5JSJ4 861 aaKnown RBP19.26■□□□□ 0.67
UPF3A-203ENST00000474056 TANGO2Q6ICL3 276 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 GOLGA5Q8TBA6 731 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 C2orf15Q8WU43 125 aaKnown RBP19.26■□□□□ 0.67
UPF3A-203ENST00000474056 ZNF516Q92618 1163 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 PSMG2Q969U7 264 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 ZSWIM3Q96MP5 696 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 ASB16Q96NS5 453 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 ACBD6Q9BR61 282 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 DMAC2Q9NW81 257 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 ASB3Q9Y575 518 aa19.26■□□□□ 0.67
UPF3A-203ENST00000474056 ANAPC1Q9H1A4 1944 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 A0A1W2PRU2 124 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 GABRDO14764 452 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 PI15O43692 258 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 HAPLN1P10915 354 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-203ENST00000474056 AOC1P19801 751 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 CLCN5P51795 746 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 MYL7Q01449 175 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 NHLH1Q02575 133 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 TCF15Q12870 199 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 FAM78AQ5JUQ0 283 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 LIMS2Q7Z4I7 341 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 DNAJB7Q7Z6W7 309 aaPredicted RBP19.25■□□□□ 0.67
UPF3A-203ENST00000474056 SLC9A9Q8IVB4 645 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 SPATA18Q8TC71 538 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 KBTBD7Q8WVZ9 684 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 ELSPBP1Q96BH3 223 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 PKMYT1Q99640 499 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 PI4K2AQ9BTU6 479 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 ARHGEF3Q9NR81 526 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 PCDHB5Q9Y5E4 795 aa19.25■□□□□ 0.67
UPF3A-203ENST00000474056 PDXKO00764 312 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 LHX1P48742 406 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 GPR15P49685 360 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 STXBP5Q5T5C0 1151 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 GAREM2Q75VX8 874 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 ITIH5Q86UX2 942 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 FAM200AQ8TCP9 573 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 GIPC2Q8TF65 315 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 CCDC47Q96A33 483 aaKnown RBP19.24■□□□□ 0.67
UPF3A-203ENST00000474056 PRRX2Q99811 253 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 SLITRK6Q9H5Y7 841 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 TBC1D17Q9HA65 648 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 NCANO14594 1321 aa19.24■□□□□ 0.67
UPF3A-203ENST00000474056 MYH10P35580 1976 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 KIF26AQ9ULI4 1882 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-203ENST00000474056 LRRIQ3A6PVS8 624 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-203ENST00000474056 NR3C1P04150 777 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 GABRR2P28476 465 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 GRM2Q14416 872 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 KCNB1Q14721 858 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 NFE2Q16621 373 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-203ENST00000474056 DPH6Q7L8W6 267 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 FMR1NBQ8N0W7 255 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-203ENST00000474056 STKLD1Q8NE28 680 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 ZSCAN18Q8TBC5 510 aaPredicted RBP19.23■□□□□ 0.67
UPF3A-203ENST00000474056 PARD3BQ8TEW8 1205 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 TMEM174Q8WUU8 243 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 SMARCD2Q92925 531 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 ZFP14Q9HCL3 533 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 GTF3C4Q9UKN8 822 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 MAPK8IP1Q9UQF2 711 aa19.23■□□□□ 0.67
UPF3A-203ENST00000474056 STK25O00506 426 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 GALR2O43603 387 aaPredicted RBP19.22■□□□□ 0.67
UPF3A-203ENST00000474056 RFX1P22670 979 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 WARSP23381 471 aaKnown RBP19.22■□□□□ 0.67
UPF3A-203ENST00000474056 LMO2P25791 158 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms