RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 TASP1Q9H6P5 420 aa21.3■■□□□ 1
COL9A3-210ENST00000472880 C8orf33Q9H7E9 229 aaPredicted RBP21.3■■□□□ 1
COL9A3-210ENST00000472880 LMAN1LQ9HAT1 526 aa21.3■■□□□ 1
COL9A3-210ENST00000472880 FOXD4L1Q9NU39 408 aa21.3■■□□□ 1
COL9A3-210ENST00000472880 PANK4Q9NVE7 773 aa21.3■■□□□ 1
COL9A3-210ENST00000472880 MTMR6Q9Y217 621 aa21.3■■□□□ 1
COL9A3-210ENST00000472880 SPTBN4Q9H254 2564 aa21.3■■□□□ 1
COL9A3-210ENST00000472880 ITGB3P05106 788 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 POLR2BP30876 1174 aaKnown RBP21.29■■□□□ 1
COL9A3-210ENST00000472880 CCR3P51677 355 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 TSPY1Q01534 308 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 ARHGAP29Q52LW3 1261 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 DCLK2Q8N568 766 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 GIPC2Q8TF65 315 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 NOC3LQ8WTT2 800 aaKnown RBP21.29■■□□□ 1
COL9A3-210ENST00000472880 CACTINQ8WUQ7 758 aaKnown RBP21.29■■□□□ 1
COL9A3-210ENST00000472880 NELL1Q92832 810 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 PANK2Q9BZ23 570 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 OBP2AQ9NY56 170 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 SMG5Q9UPR3 1016 aaKnown RBP21.29■■□□□ 1
COL9A3-210ENST00000472880 PCDHB5Q9Y5E4 795 aa21.29■■□□□ 1
COL9A3-210ENST00000472880 A0A087X0B3 334 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 FRMD3A2A2Y4 597 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 LILRB5O75023 590 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 HAPLN1P10915 354 aaPredicted RBP21.28■■□□□ 1
COL9A3-210ENST00000472880 WNT7BP56706 349 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 LRRC32Q14392 662 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 STK38Q15208 465 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 LRRTM3Q86VH5 581 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 PDILTQ8N807 584 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 ZSWIM2Q8NEG5 633 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 SECISBP2LQ93073 1101 aaKnown RBP21.28■■□□□ 1
COL9A3-210ENST00000472880 EPC1Q9H2F5 836 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 TMEM206Q9H813 350 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 IL21Q9HBE4 155 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 AGAP1Q9UPQ3 857 aa21.28■■□□□ 1
COL9A3-210ENST00000472880 EP300Q09472 2414 aaPredicted RBP21.27■■□□□ 1
COL9A3-210ENST00000472880 GOLGA8IPA6NC78 632 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 GOLGA8JA6NMD2 632 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 STX6O43752 255 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 EXTL3O43909 919 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 HUS1O60921 280 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 PRAMEF12O95522 483 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 CHRNB1P11230 501 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 SOX9P48436 509 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 NRLP54845 237 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 BFSP1Q12934 665 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 MAMSTRQ6ZN01 415 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 CCDC65Q8IXS2 484 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 PDCL2Q8N4E4 241 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 C1orf127Q8N9H9 656 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 BPIFB1Q8TDL5 484 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 RMDN1Q96DB5 314 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 ZFYVE19Q96K21 471 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 CBWD1Q9BRT8 395 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 FGFBP2Q9BYJ0 223 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 ZMYM5Q9UJ78 669 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 ITGA11Q9UKX5 1188 aa21.27■■□□□ 1
COL9A3-210ENST00000472880 ZNF292O60281 2723 aa21.27■□□□□ 0.99
COL9A3-210ENST00000472880 SPECC1L-ADORA2AF8WAN1 911 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 K7ELQ4 463 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-210ENST00000472880 KRT19P08727 400 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 TMEM191BP0C7N4 346 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 WEE1P30291 646 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 CTHP32929 405 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 NASPP49321 788 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-210ENST00000472880 PLCB2Q00722 1185 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 NFE2Q16621 373 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-210ENST00000472880 STXBP4Q6ZWJ1 553 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 RALGPS2Q86X27 583 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-210ENST00000472880 CSGALNACT2Q8N6G5 542 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 LRRC52Q8N7C0 313 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 TTC8Q8TAM2 541 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 LRRC3BQ96PB8 259 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 PCIF1Q9H4Z3 704 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 L1RE1Q9UN81 338 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 OTOGLQ3ZCN5 2332 aa21.26■□□□□ 0.99
COL9A3-210ENST00000472880 F5P12259 2224 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 MYBPHLA2RUH7 354 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 PRPF40AO75400 957 aaKnown RBP21.25■□□□□ 0.99
COL9A3-210ENST00000472880 PRPF6O94906 941 aaKnown RBP21.25■□□□□ 0.99
COL9A3-210ENST00000472880 TDGF1P13385 188 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 MYL7Q01449 175 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 TMEM86AQ8N2M4 240 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 GPD1LQ8N335 351 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 LEO1Q8WVC0 666 aaPredicted RBP21.25■□□□□ 0.99
COL9A3-210ENST00000472880 PI4K2AQ9BTU6 479 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 LRRC27Q9C0I9 530 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 TNMDQ9H2S6 317 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 TMLHEQ9NVH6 421 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 THG1LQ9NWX6 298 aaKnown RBP21.25■□□□□ 0.99
COL9A3-210ENST00000472880 DDX43Q9NXZ2 648 aaKnown RBP21.25■□□□□ 0.99
COL9A3-210ENST00000472880 GTSE1Q9NYZ3 720 aa21.25■□□□□ 0.99
COL9A3-210ENST00000472880 R3HCC1Q9Y3T6 440 aaKnown RBP21.25■□□□□ 0.99
COL9A3-210ENST00000472880 KIAA0391O15091 583 aaKnown RBP21.24■□□□□ 0.99
COL9A3-210ENST00000472880 AVPR1AP37288 418 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 CXCL12P48061 93 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 SATB1Q01826 763 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 CMTM8Q8IZV2 173 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 CELF5Q8N6W0 485 aaKnown RBP21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms