RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.13■□□□□ 0.815e-7■■■■□ 23.7
SMC4-209ENST00000468653 A8MXQ7 604 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 O00370 1275 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 MICAL2O94851 1124 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 ELF2Q15723 593 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 SLC24A5Q71RS6 500 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 ACOT1Q86TX2 421 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 HES6Q96HZ4 224 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 BTBD6Q96KE9 485 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 DNAI2Q9GZS0 605 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 RNF14Q9UBS8 474 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 ANAPC7Q9UJX3 599 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 INPP5FQ9Y2H2 1132 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 SCINQ9Y6U3 715 aa20.13■□□□□ 0.81
SMC4-209ENST00000468653 M0QYV0 167 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 PODXLO00592 558 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 GNL1P36915 607 aaPredicted RBP20.12■□□□□ 0.81
SMC4-209ENST00000468653 ATN1P54259 1190 aaPredicted RBP20.12■□□□□ 0.81
SMC4-209ENST00000468653 TUBB4BP68371 445 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 STILQ15468 1287 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 LLGL2Q6P1M3 1020 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 RSRC2Q7L4I2 434 aaKnown RBP20.12■□□□□ 0.81
SMC4-209ENST00000468653 RTN4RL1Q86UN2 441 aaPredicted RBP20.12■□□□□ 0.81
SMC4-209ENST00000468653 PBKQ96KB5 322 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 RPGRIP1Q96KN7 1286 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 SELENOOQ9BVL4 669 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 FTHL17Q9BXU8 183 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 PARVAQ9NVD7 372 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 L1RE1Q9UN81 338 aa20.12■□□□□ 0.81
SMC4-209ENST00000468653 C9IYK1 514 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 PDE2AO00408 941 aaPredicted RBP20.11■□□□□ 0.81
SMC4-209ENST00000468653 CES2O00748 559 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 CYB561D2O14569 222 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 POMCP01189 267 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 RPL9P32969 192 aaKnown RBP20.11■□□□□ 0.81
SMC4-209ENST00000468653 C1QTNF8P60827 252 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 MAMLD1Q13495 774 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 CFAP221Q4G0U5 840 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 PLEKHA7Q6IQ23 1121 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 CTU1Q7Z7A3 348 aaKnown RBP20.11■□□□□ 0.81
SMC4-209ENST00000468653 ZNF598Q86UK7 904 aaKnown RBP20.11■□□□□ 0.81
SMC4-209ENST00000468653 ADGRF2Q8IZF7 708 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 TOP6BLQ8N6T0 577 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 MSANTD4Q8NCY6 345 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 KBTBD7Q8WVZ9 684 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 CACNG4Q9UBN1 327 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 CASTOR2A6NHX0 329 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 MYO1FO00160 1098 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 PITPNM1O00562 1244 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 EOMESO95936 686 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 PDGFRBP09619 1106 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 COMTP21964 271 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 CLCNKBP51801 687 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 LCLAT1Q6UWP7 414 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 C12orf29Q8N999 325 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 MS4A14Q96JA4 679 aa20.11■□□□□ 0.81
SMC4-209ENST00000468653 MIF4GDA9UHW6 222 aaKnown RBP20.1■□□□□ 0.81
SMC4-209ENST00000468653 SPOPO43791 374 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 GRIK3Q13003 919 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 SLC39A5Q6ZMH5 540 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 LIMS2Q7Z4I7 341 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 PDCL2Q8N4E4 241 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 UBA3Q8TBC4 463 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 UBE2Q2Q8WVN8 375 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 RABGGTAQ92696 567 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 CRISPLD2Q9H0B8 497 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 SYNCQ9H7C4 482 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 TSPAN16Q9UKR8 245 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 STRIP2Q9ULQ0 834 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 NME7Q9Y5B8 376 aa20.1■□□□□ 0.81
SMC4-209ENST00000468653 CEP104O60308 925 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 NBNO60934 754 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 FGFR1P11362 822 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 WARSP23381 471 aaKnown RBP20.09■□□□□ 0.81
SMC4-209ENST00000468653 GOLGA7BQ2TAP0 167 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 PPP1R26Q5T8A7 1209 aaPredicted RBP20.09■□□□□ 0.81
SMC4-209ENST00000468653 DNAJC24Q6P3W2 148 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 FBXO46Q6PJ61 603 aaPredicted RBP20.09■□□□□ 0.81
SMC4-209ENST00000468653 GLB1LQ6UWU2 654 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 UBL4BQ8N7F7 174 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 LINC01599Q8WXQ3 324 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 DDX27Q96GQ7 796 aaKnown RBP20.09■□□□□ 0.81
SMC4-209ENST00000468653 FAM49BQ9NUQ9 324 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 SMARCAL1Q9NZC9 954 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 EHD2Q9NZN4 543 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 CYTH4Q9UIA0 394 aa20.09■□□□□ 0.81
SMC4-209ENST00000468653 DCDC2CA8MYV0 355 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 DDX3YO15523 660 aaKnown RBP20.08■□□□□ 0.81
SMC4-209ENST00000468653 FAM163BP0C2L3 166 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 LMO2P25791 158 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 GPD2P43304 727 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 FAM189BP81408 668 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 UPP1Q16831 310 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 PTPN20Q4JDL3 420 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 CYP4A22Q5TCH4 519 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 DSTYKQ6XUX3 929 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 FEZF2Q8TBJ5 459 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 C18orf8Q96DM3 657 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 ZNF333Q96JL9 665 aa20.08■□□□□ 0.81
SMC4-209ENST00000468653 SENP8Q96LD8 212 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms