RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 DUX4L3P0CJ86 424 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 DUX4L4P0CJ87 422 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 DUX4L5P0CJ88 424 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 DUX4L6P0CJ89 424 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 DUX4L7P0CJ90 424 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 ATP1A3P13637 1013 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 PLA2G4AP47712 749 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 ACOT2P49753 483 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 SERPINB9P50453 376 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 CLCN6P51797 869 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 PMS1P54277 932 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 PIGHQ14442 188 aaPredicted RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 CYP4A22Q5TCH4 519 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 TMA16Q96EY4 203 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 PRPF18Q99633 342 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 DUX4Q9UBX2 424 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 ZNF229Q9UJW7 825 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 PRR12Q9ULL5 1215 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 ADGRB2O60241 1585 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 NMT1P30419 496 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 EFCAB12Q6NXP0 572 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 C11orf74Q86VG3 221 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 CLEC4FQ8N1N0 589 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 CPA5Q8WXQ8 436 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 SH2D3AQ9BRG2 576 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 MRPL1Q9BYD6 325 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 TAF1DQ9H5J8 278 aaPredicted RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 NAGPAQ9UK23 515 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 HMGB3O15347 200 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 RHOBTB1O94844 696 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 EGFRP00533 1210 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 ERVK-10P10266 1014 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 CUL4AQ13619 759 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 PTK6Q13882 451 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 STAT4Q14765 748 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 IRAK1BP1Q5VVH5 260 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 C16orf89Q6UX73 402 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 VMP1Q96GC9 406 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 NT5C1AQ9BXI3 368 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 CPA4Q9UI42 421 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 COL14A1Q05707 1796 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 SLC11A2P49281 568 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 ANXA11P50995 505 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 CNTN1Q12860 1018 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 POLD3Q15054 466 aaPredicted RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 CCDC142Q17RM4 750 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 NBPF9Q3BBW0 867 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 MDH1BQ5I0G3 518 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 STOX1Q6ZVD7 989 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 IPMKQ8NFU5 416 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 KCNV2Q8TDN2 545 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 GRAMD1AQ96CP6 724 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 OLFM3Q96PB7 478 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 PAPOLBQ9NRJ5 636 aaKnown RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 RIC8BQ9NVN3 520 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 SPASTQ9UBP0 616 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 FHOD1Q9Y613 1164 aa9.09□□□□□ -0.95
HPS4-209ENST00000466781 MED1Q15648 1581 aaPredicted RBP9.09□□□□□ -0.95
HPS4-209ENST00000466781 LZTS3O60299 673 aaPredicted RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 CHRM3P20309 590 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 HSPA9P38646 679 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 PCYT1AP49585 367 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 PDK1Q15118 436 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 SGO1Q5FBB7 561 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 GSPT2Q8IYD1 628 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 ATL2Q8NHH9 583 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 DIS3LQ8TF46 1054 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 USP13Q92995 863 aaPredicted RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 RPS6KB2Q9UBS0 482 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 ADM5C9JUS6 153 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 FOXP2O15409 715 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 APRTP07741 180 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 PDHA1P08559 390 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 FGFR4P22455 802 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 BRD2P25440 801 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 ZNF177Q13360 481 aaPredicted RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 LRRC14Q15048 493 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 ANGPT1Q15389 498 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 POTEAQ6S8J7 498 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 DHX40Q8IX18 779 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 GUF1Q8N442 669 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 RBBP8NLQ8NC74 664 aaPredicted RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 VPS37AQ8NEZ2 397 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 NFKBIZQ9BYH8 718 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 GLIS2Q9BZE0 524 aaPredicted RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 DDX47Q9H0S4 455 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 ABI2Q9NYB9 513 aaPredicted RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 ERAP1Q9NZ08 941 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 C16orf96A6NNT2 1141 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 PDHXO00330 501 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 PDXKO00764 312 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 AKAP10O43572 662 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 ENO1P06733 434 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 PNPLA4P41247 253 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 ALDH6A1Q02252 535 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 TBL3Q12788 808 aaKnown RBP9.08□□□□□ -0.96
HPS4-209ENST00000466781 BTNL9Q6UXG8 535 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 RFX8Q6ZV50 586 aa9.08□□□□□ -0.96
HPS4-209ENST00000466781 EFL1Q7Z2Z2 1120 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms