RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CASTOR2A6NHX0 329 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 TMEM189-UBE2V1I3L0A0 370 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 EPN2O95208 641 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 MATR3P43243 847 aaKnown RBP eCLIP12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 RAP1GAPP47736 663 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 NOVA1P51513 510 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 BMT2Q1RMZ1 405 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 XKR4Q5GH76 650 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 PLA2G2CQ5R387 149 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 RNF43Q68DV7 783 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 PDXDC1Q6P996 788 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 POTEHQ6S545 545 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 ALKAL1Q6UXT8 129 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 RTL10Q7L3V2 364 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 WDR5BQ86VZ2 330 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 CEP120Q8N960 986 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 KIAA0895Q8NCT3 520 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 PIK3R5Q8WYR1 880 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 UROC1Q96N76 676 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 PPP1R10Q96QC0 940 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 TTPALQ9BTX7 342 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 HAPLN2Q9GZV7 340 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 CXCL16Q9H2A7 254 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 ZNF334Q9HCZ1 680 aaPredicted RBP12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 STYXL1Q9Y6J8 313 aa12.9□□□□□ -0.34
SQSTM1-206ENST00000466342 A0A0B4J269 797 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SMIM28A0A1B0GU29 152 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 TISP43B9A030 160 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 ANKRD63C9JTQ0 380 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 GIPC1O14908 333 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 KIF4AO95239 1232 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SMC2O95347 1197 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 HARSP12081 509 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 HOXA6P31267 233 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 ZNF252P-AS1Q0IIN9 211 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 STK4Q13043 487 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 RTP2Q5QGT7 225 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 FAM171A1Q5VUB5 890 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SLFN12LQ6IEE8 588 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SYCP3Q8IZU3 236 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SPATA20Q8TB22 786 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 LNX1Q8TBB1 728 aaPredicted RBP12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SLC7A14Q8TBB6 771 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SCFD1Q8WVM8 642 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 ZCCHC14Q8WYQ9 949 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SMARCE1Q969G3 411 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 KIF12Q96FN5 646 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 DDX27Q96GQ7 796 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 ACAP3Q96P50 834 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 GSDMAQ96QA5 445 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SCNM1Q9BWG6 230 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 IKZF4Q9H2S9 585 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 SLC38A7Q9NVC3 462 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 RMND1Q9NWS8 449 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 CACNG4Q9UBN1 327 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 PIAS3Q9Y6X2 628 aa12.89□□□□□ -0.35
SQSTM1-206ENST00000466342 NUP205Q92621 2012 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 OGTO15294 1046 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 TRAPPC3O43617 180 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 FAM189A1O60320 539 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 B3GAT3O94766 335 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 TOP3BO95985 862 aaKnown RBP12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 KCNE1P15382 129 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 FCARP24071 287 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 HOXD13P35453 343 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 MLLT6P55198 1093 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 OSTNP61366 133 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 LRRC32Q14392 662 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 GRM2Q14416 872 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 PSMD5Q16401 504 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 KYAT1Q16773 422 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 UPP1Q16831 310 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 CEP57Q86XR8 500 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 HASPINQ8TF76 798 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 ERCC4Q92889 916 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 MSTO1Q9BUK6 570 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 ZFP14Q9HCL3 533 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 AVENQ9NQS1 362 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 PCDHGA5Q9Y5G8 931 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 PCDHA5Q9Y5H7 936 aa12.88□□□□□ -0.35
SQSTM1-206ENST00000466342 ITPR1Q14643 2758 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 TGFB1I1O43294 461 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 RHOP08100 348 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 PSMC3P17980 439 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 GARTP22102 1010 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 FGFR3P22607 806 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 CCNE1P24864 410 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 ADSSP30520 456 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 GDI1P31150 447 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 CLCNKBP51801 687 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 RAB33AQ14088 237 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 KNOP1Q1ED39 458 aaKnown RBP12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 SLC5A9Q2M3M2 681 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 SEZ6Q53EL9 994 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 SOWAHCQ53LP3 525 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 GLRA4Q5JXX5 417 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 CACNA2D4Q7Z3S7 1137 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 NELFCDQ8IXH7 590 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 POMGNT1Q8WZA1 660 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms