RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ACAP3Q96P50 834 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 SLC13A1Q9BZW2 595 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 RAB6BQ9NRW1 208 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 DMAC2Q9NW81 257 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 USP15Q9Y4E8 981 aaPredicted RBP12.24□□□□□ -0.45
NPHP4-204ENST00000460696 CACNA1SQ13698 1873 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 ZBBXA8MT70 800 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 APRTP07741 180 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 PDGFRBP09619 1106 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 CENPCQ03188 943 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 TAP1Q03518 808 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 C3orf62Q6ZUJ4 267 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 SAMD3Q8N6K7 520 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 GBP7Q8N8V2 638 aaPredicted RBP12.24□□□□□ -0.45
NPHP4-204ENST00000460696 LRRC37BQ96QE4 947 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 KLC2Q9H0B6 622 aa12.24□□□□□ -0.45
NPHP4-204ENST00000460696 H0Y3Z8 333 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 XPOTO43592 962 aaKnown RBP12.23□□□□□ -0.45
NPHP4-204ENST00000460696 NOVP48745 357 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 NR1H3Q13133 447 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 DNAJC3Q13217 504 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 TRPM8Q7Z2W7 1104 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 KIF2BQ8N4N8 673 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 FAM71DQ8N9W8 422 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 OR5B17Q8NGF7 314 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 CLEC4DQ8WXI8 215 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 CDKL2Q92772 493 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 ECT2Q9H8V3 914 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 DDX20Q9UHI6 824 aaKnown RBP12.23□□□□□ -0.45
NPHP4-204ENST00000460696 MYH15Q9Y2K3 1946 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 CCT8L1PA6NM43 557 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 COPEO14579 308 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 EDIL3O43854 480 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 TTC4O95801 387 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 CXCL8P10145 99 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 HNRNPH1P31943 449 aaKnown RBP12.23□□□□□ -0.45
NPHP4-204ENST00000460696 ARL1P40616 181 aaPredicted RBP12.23□□□□□ -0.45
NPHP4-204ENST00000460696 PSMD6Q15008 389 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 DUPD1Q68J44 220 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 FAM117BQ6P1L5 589 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 MFSD7Q6UXD7 560 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 CPNE8Q86YQ8 564 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 TIAM2Q8IVF5 1701 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 PLCH1Q4KWH8 1693 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 FAM47DPA6NHR8 397 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 ARHGAP42A6NI28 874 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 KCNN4O15554 427 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 ZNF862O60290 1169 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 GLRA2P23416 452 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 TMEM132DQ14C87 1099 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 FAXCQ5TGI0 409 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 C7orf43Q8WVR3 580 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 DCLK3Q9C098 648 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 SPATC1LQ9H0A9 340 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 TXLNGQ9NUQ3 528 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 WHRNQ9P202 907 aa12.23□□□□□ -0.45
NPHP4-204ENST00000460696 F8VP50 259 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 DDX3YO15523 660 aaKnown RBP12.22□□□□□ -0.45
NPHP4-204ENST00000460696 PSTPIP1O43586 416 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 KRT37O76014 449 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 ZSCAN5DPP0CG00 497 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 LCP1P13796 627 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 LAMTOR4Q0VGL1 99 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 TDRD10Q5VZ19 366 aaKnown RBP12.22□□□□□ -0.45
NPHP4-204ENST00000460696 MFSD14CQ5VZR4 134 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 PARP9Q8IXQ6 854 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 SIX6OS1Q8N1H7 587 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 ZC3H15Q8WU90 426 aaKnown RBP12.22□□□□□ -0.45
NPHP4-204ENST00000460696 HPDLQ96IR7 371 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 SERPINB12Q96P63 405 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 LBHD1Q9BQE6 289 aaPredicted RBP12.22□□□□□ -0.45
NPHP4-204ENST00000460696 C10orf88Q9H8K7 445 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 NCKAP1LP55160 1127 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 TMPRSS15P98073 1019 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 KLHL38Q2WGJ6 581 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 CCDC33Q8N5R6 958 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 FAM129AQ9BZQ8 928 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 VPS33BQ9H267 617 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 IFT122Q9HBG6 1241 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 CTNNAL1Q9UBT7 734 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 XPO7Q9UIA9 1087 aaKnown RBP12.22□□□□□ -0.45
NPHP4-204ENST00000460696 ARL2BPQ9Y2Y0 163 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 MANSC4A6NHS7 340 aaPredicted RBP12.22□□□□□ -0.45
NPHP4-204ENST00000460696 DCDC2CA8MYV0 355 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 CREB3O43889 395 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 ADCY3O60266 1144 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 HBP1O60381 514 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 CCNG2Q16589 344 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 GLRA4Q5JXX5 417 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 TWF2Q6IBS0 349 aaKnown RBP12.22□□□□□ -0.45
NPHP4-204ENST00000460696 KCNV1Q6PIU1 500 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 ARHGAP24Q8N264 748 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 CFAP61Q8NHU2 1237 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 ACTL9Q8TC94 416 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 ERAP1Q9NZ08 941 aa12.22□□□□□ -0.45
NPHP4-204ENST00000460696 PLA2G6O60733 806 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 KITP10721 976 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 UBA1P22314 1058 aaKnown RBP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 ALDH5A1P51649 535 aaPredicted RBP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 OTUD4Q01804 1114 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms