RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 IRAK3Q9Y616 596 aa16.84■□□□□ 0.29
USP40-206ENST00000443711 A0A1W2PQJ5 194 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 RFXAPO00287 272 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 FOXN3O00409 490 aaPredicted RBP16.83■□□□□ 0.28
USP40-206ENST00000443711 TBC1D4O60343 1298 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 TPM1P09493 284 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 KRT5P13647 590 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 LMO2P25791 158 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 CDC25BP30305 580 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 USP8P40818 1118 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 STAT1P42224 750 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 TSPY1Q01534 308 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 CAMK1Q14012 370 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 ZNF697Q5TEC3 545 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 PLPP4Q5VZY2 271 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 TMEM270Q6UE05 265 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 TMC6Q7Z403 805 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 CRYBG2Q8N1P7 616 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 MRPL43Q8N983 215 aaKnown RBP16.83■□□□□ 0.28
USP40-206ENST00000443711 ZNF397Q8NF99 534 aaPredicted RBP16.83■□□□□ 0.28
USP40-206ENST00000443711 WHAMMQ8TF30 809 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 CPLX3Q8WVH0 158 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 AUTS2Q8WXX7 1259 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 TNIP3Q96KP6 325 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 SYT15Q9BQS2 421 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 EMILIN2Q9BXX0 1053 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 TTYH3Q9C0H2 523 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 TTYH1Q9H313 450 aaPredicted RBP16.83■□□□□ 0.28
USP40-206ENST00000443711 RXFP1Q9HBX9 757 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 MYO6Q9UM54 1294 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 CAPN11Q9UMQ6 739 aa16.83■□□□□ 0.28
USP40-206ENST00000443711 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 PTPN1P18031 435 aaKnown RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 ACAT1P24752 427 aaKnown RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 JAM2P57087 298 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 ZNF394Q53GI3 561 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 HABP4Q5JVS0 413 aaKnown RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 FMNL3Q8IVF7 1028 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 DRC7Q8IY82 874 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 DCP1BQ8IZD4 617 aaKnown RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 RBBP8NLQ8NC74 664 aaPredicted RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 MRPL38Q96DV4 380 aaKnown RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 TMEM176AQ96HP8 235 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 LRCH3Q96II8 777 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 CLSTN3Q9BQT9 956 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 ELOVL4Q9GZR5 314 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 ZCWPW1Q9H0M4 648 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 LUC7L2Q9Y383 392 aaKnown RBP16.82■□□□□ 0.28
USP40-206ENST00000443711 NME7Q9Y5B8 376 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 MYO7AQ13402 2215 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 CHD9Q3L8U1 2897 aa16.82■□□□□ 0.28
USP40-206ENST00000443711 COL4A4P53420 1690 aaPredicted RBP16.81■□□□□ 0.28
USP40-206ENST00000443711 C2orf71A6NGG8 1288 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 F8VZ95 297 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 HCRTO43612 131 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 GYPCP04921 128 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 PAEPP09466 180 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 RPL17P18621 184 aaKnown RBP16.81■□□□□ 0.28
USP40-206ENST00000443711 OR1D2P34982 312 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 IRS1P35568 1242 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 SOX5P35711 763 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 NDUFV1P49821 464 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 RAD23BP54727 409 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 BPIFB4P59827 614 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 ZBED6P86452 979 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 MAPRE1Q15691 268 aaKnown RBP16.81■□□□□ 0.28
USP40-206ENST00000443711 INTS6LQ5JSJ4 861 aaKnown RBP16.81■□□□□ 0.28
USP40-206ENST00000443711 SLC8B1Q6J4K2 584 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 GPR153Q6NV75 609 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 RSPO2Q6UXX9 243 aaPredicted RBP16.81■□□□□ 0.28
USP40-206ENST00000443711 ACOT1Q86TX2 421 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 FAM71AQ8IYT1 594 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 SLC4A11Q8NBS3 891 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 OR10T2Q8NGX3 314 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 BAP1Q92560 729 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 ANP32BQ92688 251 aaKnown RBP16.81■□□□□ 0.28
USP40-206ENST00000443711 HEXIM2Q96MH2 286 aaKnown RBP16.81■□□□□ 0.28
USP40-206ENST00000443711 KLHL5Q96PQ7 755 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 TWNKQ96RR1 684 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 GPR88Q9GZN0 384 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 NUCKS1Q9H1E3 243 aaKnown RBP16.81■□□□□ 0.28
USP40-206ENST00000443711 PRDM12Q9H4Q4 367 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 LMCD1Q9NZU5 365 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 HMGXB4Q9UGU5 601 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 KIAA1257Q9ULG3 409 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 CDY1Q9Y6F8 540 aa16.81■□□□□ 0.28
USP40-206ENST00000443711 HIDE1A8MVS5 230 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 RNF225M0QZC1 329 aaPredicted RBP16.8■□□□□ 0.28
USP40-206ENST00000443711 TEX28O15482 410 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 ATP2C2O75185 946 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 CSPG5O95196 566 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 ADH1AP07327 375 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 CNPP09543 421 aaKnown RBP16.8■□□□□ 0.28
USP40-206ENST00000443711 CPB1P15086 417 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 CASP14P31944 242 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 ZNF132P52740 706 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 ARPP19P56211 112 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 SMARCB1Q12824 385 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 TBX2Q13207 712 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms