RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 FAM186BQ8IYM0 893 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 CEP120Q8N960 986 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 XXYLT1Q8NBI6 393 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 ING5Q8WYH8 240 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 EEF2KMTQ96G04 330 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 SHDQ96IW2 340 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 ADPGKQ9BRR6 497 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 MKNK1Q9BUB5 465 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 SPTBN2O15020 2390 aa13.1□□□□□ -0.31
PTPRF-208ENST00000437607 MED19A0JLT2 244 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-208ENST00000437607 ANKRD63C9JTQ0 380 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 PES1O00541 588 aaKnown RBP13.09□□□□□ -0.31
PTPRF-208ENST00000437607 NRG2O14511 850 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-208ENST00000437607 B3GAT3O94766 335 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 PSMC2P35998 433 aaKnown RBP13.09□□□□□ -0.31
PTPRF-208ENST00000437607 FANCCQ00597 558 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 PRKCQQ04759 706 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 KRT31Q15323 416 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 DCAF4L1Q3SXM0 396 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 FILIP1LQ4L180 1135 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 TCP11X2Q5H9J9 407 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 ZC3H14Q6PJT7 736 aaKnown RBP13.09□□□□□ -0.31
PTPRF-208ENST00000437607 MPZL3Q6UWV2 235 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 ALKAL1Q6UXT8 129 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 FILIP1Q7Z7B0 1213 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 SAAL1Q96ER3 474 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 ACO2Q99798 780 aaKnown RBP13.09□□□□□ -0.31
PTPRF-208ENST00000437607 TCHPQ9BT92 498 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 MSTO1Q9BUK6 570 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 TRIM5Q9C035 493 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 HSD3B7Q9H2F3 369 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 PCIF1Q9H4Z3 704 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 METTL14Q9HCE5 456 aaKnown RBP13.09□□□□□ -0.31
PTPRF-208ENST00000437607 LTB4R2Q9NPC1 389 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 TAB2Q9NYJ8 693 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 TNFSF13BQ9Y275 285 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 BACE2Q9Y5Z0 518 aa13.09□□□□□ -0.31
PTPRF-208ENST00000437607 KMT2BQ9UMN6 2715 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-208ENST00000437607 SCN1AP35498 2009 aa13.08□□□□□ -0.31
PTPRF-208ENST00000437607 SPAG17Q6Q759 2223 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 ATG2BQ96BY7 2078 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 SMIM28A0A1B0GU29 152 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 WDR27A2RRH5 827 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 FAM170BA6NMN3 283 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 CLDN3O15551 220 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 MEFVO15553 781 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-208ENST00000437607 KRT13P13646 458 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 PRKCSHP14314 528 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-208ENST00000437607 CEBPBP17676 345 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 ROR1Q01973 937 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 FZD5Q13467 585 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 UBXN2BQ14CS0 331 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 ZNF528Q3MIS6 628 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 XKR4Q5GH76 650 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 DCAF17Q5H9S7 520 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-208ENST00000437607 USP37Q86T82 979 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 GPD1LQ8N335 351 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 RUBCNQ92622 972 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 CLDN23Q96B33 292 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 MCRS1Q96EZ8 462 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 UROC1Q96N76 676 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 ZMAT2Q96NC0 199 aaKnown RBP13.08□□□□□ -0.32
PTPRF-208ENST00000437607 OSBPL6Q9BZF3 934 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 KIAA1586Q9HCI6 787 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 PTPRHQ9HD43 1115 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 DMAC2Q9NW81 257 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 SPATA6Q9NWH7 488 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-208ENST00000437607 ARMCX3Q9UH62 379 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-208ENST00000437607 AGO2Q9UKV8 859 aaKnown RBP13.08□□□□□ -0.32
PTPRF-208ENST00000437607 EML5Q05BV3 1969 aa13.08□□□□□ -0.32
PTPRF-208ENST00000437607 ARHGEF37A1IGU5 675 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 GOLGA8IPA6NC78 632 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 GOLGA8JA6NMD2 632 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 ABLIM1O14639 778 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 EXTL3O43909 919 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 TBC1D4O60343 1298 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 ECI2O75521 394 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 AKAP3O75969 853 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 ABLIM3O94929 683 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 SEC24AO95486 1093 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 LDHAP00338 332 aaKnown RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 RHOP08100 348 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 FCARP24071 287 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 TARSP26639 723 aaKnown RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 ADSSP30520 456 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 COPB1P53618 953 aaKnown RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 MARSP56192 900 aaKnown RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 UBASH3AP57075 661 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 PPP2R3AQ06190 1150 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 MCL1Q07820 350 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 SNRNP35Q16560 246 aaKnown RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 MAN2A1Q16706 1144 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 PRSS36Q5K4E3 855 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 TCERG1LQ5VWI1 586 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 TANGO2Q6ICL3 276 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 SLC8B1Q6J4K2 584 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 TPRG1Q6ZUI0 275 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 ANKS3Q6ZW76 656 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 INTS8Q75QN2 995 aaKnown RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 RTL10Q7L3V2 364 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms