RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 TNIP3Q96KP6 325 aa13.14□□□□□ -0.31
LINC00339-201ENST00000404210 NT5C1AQ9BXI3 368 aa13.14□□□□□ -0.31
LINC00339-201ENST00000404210 LMAN2LQ9H0V9 348 aa13.14□□□□□ -0.31
LINC00339-201ENST00000404210 NGRNQ9NPE2 291 aaKnown RBP13.14□□□□□ -0.31
LINC00339-201ENST00000404210 MRPL17Q9NRX2 175 aaKnown RBP13.14□□□□□ -0.31
LINC00339-201ENST00000404210 AIPL1Q9NZN9 384 aa13.14□□□□□ -0.31
LINC00339-201ENST00000404210 FNIP2Q9P278 1114 aa13.14□□□□□ -0.31
LINC00339-201ENST00000404210 CDH9Q9ULB4 789 aa13.14□□□□□ -0.31
LINC00339-201ENST00000404210 MTUS1Q9ULD2 1270 aa13.14□□□□□ -0.31
LINC00339-201ENST00000404210 KIAA1257Q9ULG3 409 aa13.14□□□□□ -0.31
LINC00339-201ENST00000404210 TMEM265A0A087WTH1 108 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 OR6C75A6NL08 312 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 AKR1B15C9JRZ8 316 aaPredicted RBP13.13□□□□□ -0.31
LINC00339-201ENST00000404210 F8VZ95 297 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 GRM6O15303 877 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 CXCL14O95715 111 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 URODP06132 367 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 PAEPP09466 180 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 PDGFRBP09619 1106 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 CCDC172P0C7W6 258 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 PTPN1P18031 435 aaKnown RBP13.13□□□□□ -0.31
LINC00339-201ENST00000404210 CLCN1P35523 988 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 KRT9P35527 623 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 USP8P40818 1118 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 FXR1P51114 621 aaKnown RBP eCLIP13.13□□□□□ -0.31
LINC00339-201ENST00000404210 ZNF132P52740 706 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 ERVFC1P60507 584 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 CTXN3Q4LDR2 81 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 ZNF280DQ6N043 979 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 TMC7Q7Z402 723 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 SLC4A11Q8NBS3 891 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 OR8K1Q8NGG5 319 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 B3GALT6Q96L58 329 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 RTP3Q9BQQ7 232 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 ELOVL4Q9GZR5 314 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 ZNF576Q9H609 170 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 CERS4Q9HA82 394 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 RXFP1Q9HBX9 757 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.13□□□□□ -0.31
LINC00339-201ENST00000404210 MTRRQ9UBK8 725 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 NME7Q9Y5B8 376 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 IRAK3Q9Y616 596 aa13.13□□□□□ -0.31
LINC00339-201ENST00000404210 TSC2P49815 1807 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 LRRC53A6NM62 1247 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 GOLGA6L6A8MZA4 724 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 FSCN2O14926 492 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 CYP26A1O43174 497 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 VDRP11473 427 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 KRT5P13647 590 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 FERP16591 822 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 DNAJB1P25685 340 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 HNRNPH3P31942 346 aaKnown RBP13.12□□□□□ -0.31
LINC00339-201ENST00000404210 CREMQ03060 361 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 PTK2Q05397 1052 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 CAMK1Q14012 370 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 SMC1AQ14683 1233 aaKnown RBP13.12□□□□□ -0.31
LINC00339-201ENST00000404210 PSMD5Q16401 504 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 TSR1Q2NL82 804 aaKnown RBP13.12□□□□□ -0.31
LINC00339-201ENST00000404210 ZNF394Q53GI3 561 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 SFMBT2Q5VUG0 894 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 FAM171BQ6P995 826 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 PRSS55Q6UWB4 352 aaPredicted RBP13.12□□□□□ -0.31
LINC00339-201ENST00000404210 IRF2BP2Q7Z5L9 587 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 CNGA4Q8IV77 575 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 DCP1BQ8IZD4 617 aaKnown RBP13.12□□□□□ -0.31
LINC00339-201ENST00000404210 RBBP8NLQ8NC74 664 aaPredicted RBP13.12□□□□□ -0.31
LINC00339-201ENST00000404210 ARNTL2Q8WYA1 636 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 HEXIM2Q96MH2 286 aaKnown RBP13.12□□□□□ -0.31
LINC00339-201ENST00000404210 TWNKQ96RR1 684 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 SYT15Q9BQS2 421 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 CLSTN3Q9BQT9 956 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 ZCWPW1Q9H0M4 648 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 TLR9Q9NR96 1032 aa13.12□□□□□ -0.31
LINC00339-201ENST00000404210 MFAP3LO75121 409 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 GFPT2O94808 682 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 ACAT1P24752 427 aaKnown RBP13.11□□□□□ -0.31
LINC00339-201ENST00000404210 ADKP55263 362 aaKnown RBP13.11□□□□□ -0.31
LINC00339-201ENST00000404210 TSPY1Q01534 308 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 SMARCB1Q12824 385 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 PTPN14Q15678 1187 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 MAPRE1Q15691 268 aaKnown RBP13.11□□□□□ -0.31
LINC00339-201ENST00000404210 INTS6LQ5JSJ4 861 aaKnown RBP13.11□□□□□ -0.31
LINC00339-201ENST00000404210 SLC8B1Q6J4K2 584 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 ACOT1Q86TX2 421 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 MRPL43Q8N983 215 aaKnown RBP13.11□□□□□ -0.31
LINC00339-201ENST00000404210 SPC24Q8NBT2 197 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 B3GALNT2Q8NCR0 500 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 MICAL1Q8TDZ2 1067 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 PDLIM2Q96JY6 352 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 DNAJC7Q99615 494 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 TCF25Q9BQ70 676 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 DPEP3Q9H4B8 488 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 HMGXB4Q9UGU5 601 aa13.11□□□□□ -0.31
LINC00339-201ENST00000404210 BZW2Q9Y6E2 419 aaKnown RBP13.11□□□□□ -0.31
LINC00339-201ENST00000404210 MYBPHLA2RUH7 354 aa13.1□□□□□ -0.31
LINC00339-201ENST00000404210 C2CD2LO14523 706 aa13.1□□□□□ -0.31
LINC00339-201ENST00000404210 HCRTO43612 131 aa13.1□□□□□ -0.31
LINC00339-201ENST00000404210 LPXNO60711 386 aa13.1□□□□□ -0.31
LINC00339-201ENST00000404210 ATP2C2O75185 946 aa13.1□□□□□ -0.31
LINC00339-201ENST00000404210 C1RP00736 705 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms