RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 MAPRE2Q15555 327 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 FIGNQ5HY92 759 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 CDKAL1Q5VV42 579 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 LRRC8EQ6NSJ5 796 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 SYTL5Q8TDW5 730 aaPredicted RBP19.01■□□□□ 0.63
COL18A1-204ENST00000400337 RANBP17Q9H2T7 1088 aaKnown RBP19.01■□□□□ 0.63
COL18A1-204ENST00000400337 PPCSQ9HAB8 311 aa19.01■□□□□ 0.63
COL18A1-204ENST00000400337 LSP1P33241 339 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 BOLA3Q53S33 107 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 PPIL6Q8IXY8 311 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 EFHBQ8N7U6 833 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 PRG3Q9Y2Y8 225 aaPredicted RBP19■□□□□ 0.63
COL18A1-204ENST00000400337 SALL1Q9NSC2 1324 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 C17orf102A2RUQ5 167 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 PRRG1O14668 218 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 SPAG6O75602 509 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 POLBP06746 335 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 DCUN1D1Q96GG9 259 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 MUC3BQ9H195 1237 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 CATSPERBQ9H7T0 1116 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 MYO1DO94832 1006 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 SNRPAP09012 282 aaKnown RBP19■□□□□ 0.63
COL18A1-204ENST00000400337 MCF2P10911 925 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 IRF1P10914 325 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 GARTP22102 1010 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 TBCCQ15814 346 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 ERO1BQ86YB8 467 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 PDCD2LQ9BRP1 358 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 LACRTQ9GZZ8 138 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 AGO4Q9HCK5 861 aaKnown RBP19■□□□□ 0.63
COL18A1-204ENST00000400337 SPRP35270 261 aaPredicted RBP19■□□□□ 0.63
COL18A1-204ENST00000400337 HIC1Q14526 733 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 MPZL3Q6UWV2 235 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 TAS1R2Q8TE23 839 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 ATG4AQ8WYN0 398 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 PNKPQ96T60 521 aa19■□□□□ 0.63
COL18A1-204ENST00000400337 SMAPO00193 183 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 NDUFS3O75489 264 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 FNTAP49354 379 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 PMS1P54277 932 aaKnown RBP18.99■□□□□ 0.63
COL18A1-204ENST00000400337 ST3GAL1Q11201 340 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 SLC30A10Q6XR72 485 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 CASKIN2Q8WXE0 1202 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 MAPK7Q13164 816 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 SNX17Q15036 470 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 ZNF507Q8TCN5 953 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 FAM167BQ9BTA0 163 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 ZNF197O14709 1029 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 HSD17B3P37058 310 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 ZNF484Q5JVG2 852 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 FBXL16Q8N461 479 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 TSPAN17Q96FV3 270 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 KLC4Q9NSK0 619 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 WARS2Q9UGM6 360 aaKnown RBP18.99■□□□□ 0.63
COL18A1-204ENST00000400337 GTF2A2P52657 109 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 RABGAP1LQ5R372 815 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 ACOT1Q86TX2 421 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 CYP2W1Q8TAV3 490 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 EPHB2P29323 1055 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 SEC24CP53992 1094 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 HERVK_113P62684 666 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 KIZQ2M2Z5 673 aa18.99■□□□□ 0.63
COL18A1-204ENST00000400337 ABTB1Q969K4 478 aaPredicted RBP18.99■□□□□ 0.63
COL18A1-204ENST00000400337 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.99■□□□□ 0.632e-6■■■■■ 28.7
COL18A1-204ENST00000400337 MAP2P11137 1827 aaKnown RBP18.98■□□□□ 0.63
COL18A1-204ENST00000400337 PSTPIP1O43586 416 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 VTNP04004 478 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 KCNT1Q5JUK3 1230 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 FAXCQ5TGI0 409 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ICE2Q659A1 982 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ANO5Q75V66 913 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 C4orf19Q8IY42 314 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 L2HGDHQ9H9P8 463 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ZNF212Q9UDV6 495 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 SLC30A1Q9Y6M5 507 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 EIF4E1BA6NMX2 242 aaKnown RBP18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ALDH1A1P00352 501 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 CYFIP2Q96F07 1278 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 M0QYT0 321 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 AP5Z1O43299 807 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 SYF2O95926 243 aaKnown RBP18.98■□□□□ 0.63
COL18A1-204ENST00000400337 SOX10P56693 466 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 LVRNQ6Q4G3 990 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 SEC16BQ96JE7 1060 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 TSC22D3Q99576 134 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 MST1RQ04912 1400 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 F8VZ95 297 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 MAP3K6O95382 1288 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ETFBP38117 255 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 CTCFP49711 727 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ZNF571Q7Z3V5 609 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-204ENST00000400337 CHSY1Q86X52 802 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 KIAA0895Q8NCT3 520 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ZNF669Q96BR6 464 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ASPSCR1Q9BZE9 553 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ABI2Q9NYB9 513 aaPredicted RBP18.98■□□□□ 0.63
COL18A1-204ENST00000400337 ARHGAP20Q9P2F6 1191 aa18.98■□□□□ 0.63
COL18A1-204ENST00000400337 HMOX2P30519 316 aa18.97■□□□□ 0.63
COL18A1-204ENST00000400337 PTGER2P43116 358 aa18.97■□□□□ 0.63
COL18A1-204ENST00000400337 DDX53Q86TM3 631 aaKnown RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms