RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ARHGAP18Q8N392 663 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 TTC8Q8TAM2 541 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 LRRC8CQ8TDW0 803 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 CTNNBL1Q8WYA6 563 aaPredicted RBP11.77□□□□□ -0.53
CUX1-204ENST00000393824 NCSTNQ92542 709 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 PDP2Q9P2J9 529 aa11.77□□□□□ -0.53
CUX1-204ENST00000393824 GSTTP1A0A1W2PQM5 241 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 RSPH10B2B2RC85 870 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 H0Y3Z8 333 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 HNRNPCL1O60812 293 aaKnown RBP11.76□□□□□ -0.53
CUX1-204ENST00000393824 TJP3O95049 919 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 IGHA2P01877 340 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 RSPH10BP0C881 870 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 TXNP10599 105 aaKnown RBP11.76□□□□□ -0.53
CUX1-204ENST00000393824 MARK3P27448 753 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 PTPN4P29074 926 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 EPHB2P29323 1055 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 FOXN2P32314 431 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 TRIM32Q13049 653 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 PLA2G4FQ68DD2 849 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 ABHD15Q6UXT9 468 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 SYT11Q9BT88 431 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 STK33Q9BYT3 514 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 ZCWPW1Q9H0M4 648 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 AAASQ9NRG9 546 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 NKIRAS1Q9NYS0 192 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 LGALS13Q9UHV8 139 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 LNPEPQ9UIQ6 1025 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 ADGRA3Q8IWK6 1321 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 WDR64B1ANS9 1081 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 STBD1O95210 358 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 TPP2P29144 1249 aaPredicted RBP11.76□□□□□ -0.53
CUX1-204ENST00000393824 SOX5P35711 763 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 FLT3LGP49771 235 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 CACNA2D1P54289 1103 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 IL9RQ01113 521 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 RCN2Q14257 317 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 SNX30Q5VWJ9 437 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 C4orf50Q6ZRC1 276 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 RGS9BPQ6ZS82 235 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 ANO5Q75V66 913 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 SYT2Q8N9I0 419 aaPredicted RBP11.76□□□□□ -0.53
CUX1-204ENST00000393824 ERMNQ8TAM6 284 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 SLC35C1Q96A29 364 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 CCDC97Q96F63 343 aaPredicted RBP11.76□□□□□ -0.53
CUX1-204ENST00000393824 SENP7Q9BQF6 1050 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 CCDC28BQ9BUN5 200 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 UBE2OQ9C0C9 1292 aaKnown RBP11.76□□□□□ -0.53
CUX1-204ENST00000393824 ZWILCHQ9H900 591 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 GABBR1Q9UBS5 961 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 AJAP1Q9UKB5 411 aaPredicted RBP11.76□□□□□ -0.53
CUX1-204ENST00000393824 PHF24Q9UPV7 400 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 PCDHA10Q9Y5I2 948 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 SLC4A7Q9Y6M7 1214 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 IGSF9BQ9UPX0 1349 aa11.76□□□□□ -0.53
CUX1-204ENST00000393824 LAMA2P24043 3122 aaKnown RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 ASB14A6NK59 587 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 SFI1A8K8P3 1242 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 ANKRD63C9JTQ0 380 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 TP73O15350 636 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 CREB3O43889 395 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 TTC4O95801 387 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 PENKP01210 267 aaPredicted RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 HOXC6P09630 235 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 SMPD1P17405 629 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 COILP38432 576 aaPredicted RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 SOX10P56693 466 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 KRT76Q01546 638 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 GSTA3Q16772 222 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 KHDC1Q4VXA5 237 aaKnown RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 ZNF746Q6NUN9 644 aaPredicted RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 ARMCX6Q7L4S7 300 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 PPP1R13LQ8WUF5 828 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 TRIB2Q92519 343 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 VTI1AQ96AJ9 217 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 CDHR1Q96JP9 859 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 WHRNQ9P202 907 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 ALG6Q9Y672 507 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 NFASCO94856 1347 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 ANKRD62A6NC57 917 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 SMAPO00193 183 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 AKAP3O75969 853 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 ACSL3O95573 720 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 ALDH1A1P00352 501 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 NR3C1P04150 777 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 P4HBP07237 508 aaKnown RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 GSTT1P30711 240 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 QARSP47897 775 aaKnown RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 ARHGAP1Q07960 439 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 CALCOCO2Q13137 446 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 KPNB1Q14974 876 aaKnown RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 CELF3Q5SZQ8 465 aaKnown RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 RHBDF2Q6PJF5 856 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 METTL7BQ6UX53 244 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 ZNF467Q7Z7K2 595 aaPredicted RBP11.75□□□□□ -0.53
CUX1-204ENST00000393824 GLYCTKQ8IVS8 523 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 RHOT2Q8IXI1 618 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 UBL4BQ8N7F7 174 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 CD99L2Q8TCZ2 262 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 SCG3Q8WXD2 468 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms