RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 LRIT3Q3SXY7 679 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 CFAP100Q494V2 611 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 PPP6R3Q5H9R7 873 aaPredicted RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 METTL21CQ5VZV1 264 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 KCTD16Q68DU8 428 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 DRICH1Q6PGQ1 229 aaPredicted RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 RFX8Q6ZV50 586 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 CEP112Q8N8E3 955 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 GRAMD1AQ96CP6 724 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 ADAD1Q96M93 576 aaKnown RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 CFAP57Q96MR6 1250 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 ORAI2Q96SN7 254 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 CDK5RAP1Q96SZ6 601 aaKnown RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 NYXQ9GZU5 481 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 INTS2Q9H0H0 1204 aaKnown RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 STN1Q9H668 368 aaKnown RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 TMEM260Q9NX78 707 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 FAM8A1Q9UBU6 413 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 TRIM33Q9UPN9 1127 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 ASB3Q9Y575 518 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 AREL1O15033 823 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 POLBP06746 335 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 SNRPAP09012 282 aaKnown RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 CHN1P15882 459 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 SLC8A1P32418 973 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 CASP9P55211 416 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 SPAG1Q07617 926 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 SCARB2Q14108 478 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 SQLEQ14534 574 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 CYTH1Q15438 398 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 SKIDA1Q1XH10 827 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 ZBTB41Q5SVQ8 909 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 TMC7Q7Z402 723 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 PHLDB2Q86SQ0 1253 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 P3H2Q8IVL5 708 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 SCUBE1Q8IWY4 988 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 ZSCAN29Q8IWY8 852 aaPredicted RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 CCAR2Q8N163 923 aaKnown RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 CELF2-AS1Q8N7Q2 184 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 C3orf58Q8NDZ4 430 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 OR7G1Q8NGA0 311 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 TCF25Q9BQ70 676 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 KLHL4Q9C0H6 718 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 HAUS4Q9H6D7 363 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 NMRK1Q9NWW6 199 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 ABI2Q9NYB9 513 aaPredicted RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 CCDC162PA2VCL2 907 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 LRRD1A4D1F6 860 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 BIRC5O15392 142 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 TNFRSF21O75509 655 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 PF4V1P10720 104 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 ADCY7P51828 1080 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 MXRA7P84157 204 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 SULT2A1Q06520 285 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 DMC1Q14565 340 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 EFTUD2Q15029 972 aaKnown RBP eCLIP8.35□□□□□ -1.076e-7■■■□□ 17
USP48-203ENST00000374732 DUS1LQ6P1R4 473 aaKnown RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 SYDE1Q6ZW31 735 aaPredicted RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 ANKRD52Q8NB46 1076 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 EXD1Q8NHP7 514 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 CAGE1Q8TC20 777 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 IFT81Q8WYA0 676 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 CAMK1GQ96NX5 476 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 PHF12Q96QT6 1004 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 FRMD8Q9BZ67 464 aaPredicted RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 FRMD8P1Q9BZ68 369 aaPredicted RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 SENP6Q9GZR1 1112 aaPredicted RBP8.35□□□□□ -1.07
USP48-203ENST00000374732 USP44Q9H0E7 712 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 ANLNQ9NQW6 1124 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 KLHL9Q9P2J3 617 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 CDC23Q9UJX2 597 aa8.35□□□□□ -1.07
USP48-203ENST00000374732 TNS2Q63HR2 1409 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 CTAGE15A4D2H0 777 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 ACOD1A6NK06 481 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 IFIT3O14879 490 aaKnown RBP8.34□□□□□ -1.07
USP48-203ENST00000374732 RNMTO43148 476 aaKnown RBP8.34□□□□□ -1.07
USP48-203ENST00000374732 HNRNPRO43390 633 aaKnown RBP8.34□□□□□ -1.07
USP48-203ENST00000374732 SSBP05455 408 aaKnown RBP eCLIP8.34□□□□□ -1.07
USP48-203ENST00000374732 SNRPA1P09661 255 aaKnown RBP8.34□□□□□ -1.07
USP48-203ENST00000374732 CTAGE8P0CG41 777 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 SDSP20132 328 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 LRPAP1P30533 357 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 TUBP50607 506 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 CACNB3P54284 484 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 PDE1AP54750 535 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 NDUFA5Q16718 116 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 UGP2Q16851 508 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 ANKRD20A8PQ5CZ79 823 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 ANKRD20A2Q5SQ80 823 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 ANKRD20A3Q5VUR7 823 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 OLFML2BQ68BL8 750 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 TRIM65Q6PJ69 517 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 KDM7AQ6ZMT4 941 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 CTAGE6Q86UF2 777 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 STX12Q86Y82 276 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 CTAGE4Q8IX94 777 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 SLFN12Q8IYM2 578 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 C16orf71Q8IYS4 520 aaPredicted RBP8.34□□□□□ -1.07
USP48-203ENST00000374732 MAGEC3Q8TD91 643 aa8.34□□□□□ -1.07
USP48-203ENST00000374732 TSPEARQ8WU66 669 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms