RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 SLFN12LQ6IEE8 588 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 TRIM50Q86XT4 487 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 SCYL3Q8IZE3 742 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 CCDC33Q8N5R6 958 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 SAMD3Q8N6K7 520 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 ZNF526Q8TF50 670 aaPredicted RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 DEFB129Q9H1M3 183 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 ZFP69BQ9UJL9 534 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 SYNPO2Q9UMS6 1093 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 ZNF541Q9H0D2 1346 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 UPP2O95045 317 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 PDHA1P08559 390 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 KRT3P12035 628 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 ATP2A2P16615 1042 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 CDH8P55286 799 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 MTFR1Q15390 333 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 SLC1A5Q15758 541 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 HADHQ16836 314 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 WDR72Q3MJ13 1102 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 ANKRD20A3Q5VUR7 823 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 CEP128Q6ZU80 1094 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 TAS1R3Q7RTX0 852 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 NCAPG2Q86XI2 1143 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 KATNAL2Q8IYT4 538 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 PDIK1LQ8N165 341 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 VPS52Q8N1B4 723 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 MCUR1Q96AQ8 359 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 SLITRK1Q96PX8 696 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 KIAA1683Q9H0B3 1180 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 CISHQ9NSE2 258 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 C10orf71Q711Q0 1435 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 MT-ND3P03897 115 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 CALB1P05937 261 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 GLRA2P23416 452 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 HMGB2P26583 209 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 RAD23BP54727 409 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 MKRN3Q13064 507 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 DARS2Q6PI48 645 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 LONP2Q86WA8 852 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 ZCCHC9Q8N567 271 aaKnown RBP13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 GPRASP2Q96D09 838 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 TJP2Q9UDY2 1190 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 HEY1Q9Y5J3 304 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 USH1CQ9Y6N9 552 aa13.57□□□□□ -0.24
HMGCS1-201ENST00000325110 CCDC195A0A1B0GUA6 201 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 ZC3H11AO75152 810 aaKnown RBP eCLIP13.56□□□□□ -0.244e-23■■■□□ 16.2
HMGCS1-201ENST00000325110 RNF8O76064 485 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 INHBAP08476 426 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 EPHB2P29323 1055 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 ARL4CP56559 192 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 MDH1BQ5I0G3 518 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 BSPRYQ5W0U4 402 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 CDHR1Q96JP9 859 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 TTC25Q96NG3 672 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 NUDCD1Q96RS6 583 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 C17orf75Q9HAS0 396 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 A1CFQ9NQ94 594 aaKnown RBP13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 PSMC3IPQ9P2W1 217 aaPredicted RBP13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 LDHAP00338 332 aaKnown RBP13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 C4BPAP04003 597 aaKnown RBP13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 MXRA7P84157 204 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 BNIP1Q12981 228 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 RCN2Q14257 317 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 EAPPQ56P03 285 aaPredicted RBP13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 TFDP3Q5H9I0 405 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 C1orf228Q6PIY5 440 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 FAM83AQ86UY5 434 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 TRABD2AQ86V40 505 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 FBXO36Q8NEA4 188 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 MAML1Q92585 1016 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 ACAD9Q9H845 621 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 C15orf41Q9Y2V0 281 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 TP73O15350 636 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 OATP04181 439 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 SUPT20HL2P0C7V6 817 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 YY1P25490 414 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 RFC1P35251 1148 aaPredicted RBP13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 STXBP2Q15833 593 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 SUPT20HL1Q3ZLR7 823 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 MTDHQ86UE4 582 aaKnown RBP13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 TMEM130Q8N3G9 435 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 CEP120Q8N960 986 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 CCHCR1Q8TD31 782 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 ZBTB10Q96DT7 871 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 PPP1R12CQ9BZL4 782 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 MAD1L1Q9Y6D9 718 aa13.56□□□□□ -0.24
HMGCS1-201ENST00000325110 TTLL13PA6NNM8 815 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 MCF2LO15068 1137 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 TNNC2P02585 160 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 GJB1P08034 283 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 KITP10721 976 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 KCNA2P16389 499 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 PAX7P23759 505 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 CPA2P48052 419 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 VCPP55072 806 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 TAF1BQ53T94 588 aaPredicted RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 PPM1NQ8N819 430 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 PRPF31Q8WWY3 499 aaKnown RBP13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 FBXL18Q96ME1 805 aa13.55□□□□□ -0.24
HMGCS1-201ENST00000325110 METTL5Q9NRN9 209 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms