RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CTNNAL1Q9UBT7 734 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 TRIM49D1C9J1S8 452 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 DNALI1O14645 258 aaPredicted RBP15.45■□□□□ 0.06
TCOF1-201ENST00000323668 CYP1A2P05177 515 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 OTUD4Q01804 1114 aaKnown RBP15.45■□□□□ 0.06
TCOF1-201ENST00000323668 ANKRD20A4Q4UJ75 823 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 ANKRD20A2Q5SQ80 823 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 ANKRD20A1Q5TYW2 823 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 CERKQ8TCT0 537 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 SEPT1Q8WYJ6 367 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 NAF1Q96HR8 494 aaKnown RBP15.45■□□□□ 0.06
TCOF1-201ENST00000323668 EFHD1Q9BUP0 239 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 SHOC2Q9UQ13 582 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 GRIN2DO15399 1336 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 DDX3YO15523 660 aaKnown RBP15.45■□□□□ 0.06
TCOF1-201ENST00000323668 VCAM1P19320 739 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 VHLP40337 213 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 STYK1Q6J9G0 422 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 PAXIP1Q6ZW49 1069 aaPredicted RBP15.45■□□□□ 0.06
TCOF1-201ENST00000323668 MTDHQ86UE4 582 aaKnown RBP15.45■□□□□ 0.06
TCOF1-201ENST00000323668 E2F7Q96AV8 911 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 BFARQ9NZS9 450 aa15.45■□□□□ 0.06
TCOF1-201ENST00000323668 F5H423 210 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 PIK3R2O00459 728 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 KCNT1Q5JUK3 1230 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 ARID3BQ8IVW6 561 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 PIP4K2CQ8TBX8 421 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 ACTL9Q8TC94 416 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 SPIRE2Q8WWL2 714 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 PAFAH2Q99487 392 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 VAV3Q9UKW4 847 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 M0QZ92 97 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 PECAM1P16284 738 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 SERPINB9P50453 376 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 KPNA2P52292 529 aaKnown RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 TAF1BQ53T94 588 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 NIPA1Q7RTP0 329 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 NDUFAF2Q8N183 169 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 FRMD8Q9BZ67 464 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 FRMD8P1Q9BZ68 369 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 ZFATQ9P243 1243 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 FAM198AQ9UFP1 575 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 DCDC2CA8MYV0 355 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 CLK2P49760 499 aaKnown RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 VCPP55072 806 aaKnown RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 SOX10P56693 466 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 CRELD2Q6UXH1 353 aaPredicted RBP15.44■□□□□ 0.06
TCOF1-201ENST00000323668 RASSF3Q86WH2 238 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 FGD4Q96M96 766 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 ZNF518BQ9C0D4 1074 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 PCDH9Q9HC56 1237 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 PCMTD2Q9NV79 361 aa15.44■□□□□ 0.06
TCOF1-201ENST00000323668 SPDYE2BA6NHP3 402 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 H3BRJ5 948 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 SPDYE6P0CI01 402 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 CPA2P48052 419 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 SESN2P58004 480 aaPredicted RBP15.43■□□□□ 0.06
TCOF1-201ENST00000323668 TTC39BQ5VTQ0 682 aaPredicted RBP15.43■□□□□ 0.06
TCOF1-201ENST00000323668 SLFN11Q7Z7L1 901 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 MAP4K3Q8IVH8 894 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 SAMD3Q8N6K7 520 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 DLGAP2Q9P1A6 1054 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 AGAP1Q9UPQ3 857 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 PTPN4P29074 926 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 FMO1Q01740 532 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 ITKQ08881 620 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 ARHGAP18Q8N392 663 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 ZNF606Q8WXB4 792 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 DCPSQ96C86 337 aaKnown RBP15.43■□□□□ 0.06
TCOF1-201ENST00000323668 SCAF8Q9UPN6 1271 aaKnown RBP15.43■□□□□ 0.06
TCOF1-201ENST00000323668 ANKRD63C9JTQ0 380 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 FSCN2O14926 492 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 OATP04181 439 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 THOC5Q13769 683 aaKnown RBP15.43■□□□□ 0.06
TCOF1-201ENST00000323668 RCN1Q15293 331 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 SLC30A9Q6PML9 568 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 CATSPER4Q7RTX7 472 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 KAT2BQ92831 832 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 TRIM33Q9UPN9 1127 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 FIS1Q9Y3D6 152 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 OPLAHO14841 1288 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 JAM2P57087 298 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 STX1BP61266 288 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 GTF2BQ00403 316 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 MTFR1Q15390 333 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 MFSD7Q6UXD7 560 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 ZNF280CQ8ND82 737 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 CGRRF1Q99675 332 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 TRIM56Q9BRZ2 755 aaKnown RBP15.43■□□□□ 0.06
TCOF1-201ENST00000323668 METTL5Q9NRN9 209 aaKnown RBP15.43■□□□□ 0.06
TCOF1-201ENST00000323668 RGPD2P0DJD1 1756 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 ARFGEF2Q9Y6D5 1785 aa15.43■□□□□ 0.06
TCOF1-201ENST00000323668 GRAP2O75791 330 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 NAMPTP43490 491 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 BAG6P46379 1132 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 PKN2Q16513 984 aaKnown RBP15.42■□□□□ 0.06
TCOF1-201ENST00000323668 DNPEPQ9ULA0 475 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 NUB1Q9Y5A7 615 aa15.42■□□□□ 0.06
TCOF1-201ENST00000323668 KCNA3P22001 575 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms