RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 COL11A2P13942 1736 aaPredicted RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 SOBPA7XYQ1 873 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 MIF4GDA9UHW6 222 aaKnown RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 HNRNPCL1O60812 293 aaKnown RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 TFPTP0C1Z6 253 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ESRRAP11474 423 aaPredicted RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ETFBP38117 255 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 MAGEA1P43355 309 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 KPNA1P52294 538 aaPredicted RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 THOP1P52888 689 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 KCNJ8Q15842 424 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 PPP1R21Q6ZMI0 780 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 RAVER1Q8IY67 606 aaKnown RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 LINC00469Q8N7U9 141 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CALML6Q8TD86 181 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 BRSK1Q8TDC3 778 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CKAP2Q8WWK9 683 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 OTUD5Q96G74 571 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 PSKH2Q96QS6 385 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 MIPEPQ99797 713 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 FETUBQ9UGM5 382 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 HERC5Q9UII4 1024 aaKnown RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 MYMKA6NI61 221 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 USP17L12C9JPN9 530 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 USP17L21D6R901 530 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 DAPK3O43293 454 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 AP1G1O43747 822 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 GUCY1B2O75343 617 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 DCTN3O75935 186 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 BAIAP3O94812 1187 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CBX6O95503 412 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 KRT75O95678 551 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CRYZL1O95825 349 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CLPTM1O96005 669 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 MYCP01106 439 aaPredicted RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 TFAP2AP05549 437 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ABCB1P08183 1280 aaPredicted RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 HIBADHP31937 336 aaKnown RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 PHKA2P46019 1235 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ENTPD1P49961 510 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CHN2P52757 468 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 SF3B4Q15427 424 aaKnown RBP eCLIP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CHRNA2Q15822 529 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CCDC142Q17RM4 750 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 PPP1R2P3Q6NXS1 205 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CYFIP1Q7L576 1253 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 PLPP6Q8IY26 295 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 SMYD4Q8IYR2 804 aaPredicted RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 CADM1Q9BY67 442 aaKnown RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ZDHHC18Q9NUE0 388 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 DMAC2Q9NW81 257 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ZDHHC7Q9NXF8 308 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ZNFX1Q9P2E3 1918 aaKnown RBP6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ERVK-11Q9UQG0 969 aa6.98□□□□□ -1.29
ZNF540-201ENST00000316433 ATRNL1Q5VV63 1379 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 PNMA6FA0A0J9YX94 578 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 LRRC53A6NM62 1247 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 PGRMC1O00264 195 aaKnown RBP6.97□□□□□ -1.29
ZNF540-201ENST00000316433 HAT1O14929 419 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 SGTAO43765 313 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 KCNJ13O60928 360 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 TRPA1O75762 1119 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 DDHD2O94830 711 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 ATICP31939 592 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 CHKAP35790 457 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 DNA2P51530 1060 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 SLC12A3P55017 1021 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 RNASE9P60153 205 aaKnown RBP6.97□□□□□ -1.29
ZNF540-201ENST00000316433 DR1Q01658 176 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 SPIRE1Q08AE8 756 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 ASPHQ12797 758 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 EPHA7Q15375 998 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 FAM83BQ5T0W9 1011 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 TMEM63BQ5T3F8 832 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 DENND2CQ68D51 928 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 DUPD1Q68J44 220 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 BORAQ6PGQ7 559 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 USP43Q70EL4 1123 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 ZNF598Q86UK7 904 aaKnown RBP6.97□□□□□ -1.29
ZNF540-201ENST00000316433 ERI1Q8IV48 349 aaKnown RBP6.97□□□□□ -1.29
ZNF540-201ENST00000316433 REXO1Q8N1G1 1221 aaKnown RBP6.97□□□□□ -1.29
ZNF540-201ENST00000316433 METTL25Q8N6Q8 603 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 PDZD8Q8NEN9 1154 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 TOR1AIP2Q8NFQ8 470 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 LILRB4Q8NHJ6 448 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 EXD1Q8NHP7 514 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 PPP4R1Q8TF05 950 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 DCAF4Q8WV16 495 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 DPF3Q92784 378 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 FAM20AQ96MK3 541 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 TGS1Q96RS0 853 aaKnown RBP6.97□□□□□ -1.29
ZNF540-201ENST00000316433 TMEM47Q9BQJ4 181 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 OSBPL6Q9BZF3 934 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 SIAEQ9HAT2 523 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 PALMDQ9NP74 551 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 SIX2Q9NPC8 291 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 PCDHGA3Q9Y5H0 932 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 PCDHA3Q9Y5H8 950 aa6.97□□□□□ -1.29
ZNF540-201ENST00000316433 ZNF335Q9H4Z2 1342 aaPredicted RBP6.97□□□□□ -1.29
ZNF540-201ENST00000316433 LOC102724428A0A0B4J2F2 783 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms