RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 UBL4BQ8N7F7 174 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 PCSK9Q8NBP7 692 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 SMG8Q8ND04 991 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 C1orf131Q8NDD1 294 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 KRT35Q92764 455 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 DEFB118Q96PH6 123 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 TWNKQ96RR1 684 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 HMGXB4Q9UGU5 601 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 DDX20Q9UHI6 824 aaKnown RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 BARX2Q9UMQ3 279 aaPredicted RBP12.62□□□□□ -0.39
TRIM40-205ENST00000307859 IPPQ9Y573 584 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 CEP83Q9Y592 693 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 SCINQ9Y6U3 715 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 GRIN2DO15399 1336 aa12.62□□□□□ -0.39
TRIM40-205ENST00000307859 CCDC188H7C350 402 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 ATP8B1O43520 1251 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 XPOTO43592 962 aaKnown RBP12.61□□□□□ -0.39
TRIM40-205ENST00000307859 RRP9O43818 475 aaKnown RBP12.61□□□□□ -0.39
TRIM40-205ENST00000307859 SEC31AO94979 1220 aaKnown RBP12.61□□□□□ -0.39
TRIM40-205ENST00000307859 CD4P01730 458 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 CHRNA1P02708 482 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 AKAP5P24588 427 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 SLC1A1P43005 524 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 MARCKSL1P49006 195 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 MAMLD1Q13495 774 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 CLUL1Q15846 466 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 C2CD6Q53TS8 623 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 FAM47CQ5HY64 1035 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 BEND6Q5SZJ8 279 aaPredicted RBP12.61□□□□□ -0.39
TRIM40-205ENST00000307859 C9orf57Q5W0N0 161 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 C8orf74Q6P047 294 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 LLGL2Q6P1M3 1020 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 C18orf25Q96B23 403 aaPredicted RBP12.61□□□□□ -0.39
TRIM40-205ENST00000307859 TMEM176AQ96HP8 235 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 RNPC3Q96LT9 517 aaKnown RBP12.61□□□□□ -0.39
TRIM40-205ENST00000307859 APOL6Q9BWW8 343 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 PARVAQ9NVD7 372 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 PCDHA3Q9Y5H8 950 aa12.61□□□□□ -0.39
TRIM40-205ENST00000307859 SMIM28A0A1B0GU29 152 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 PIRO00625 290 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 PPEF2O14830 753 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 TLR3O15455 904 aaKnown RBP12.6□□□□□ -0.39
TRIM40-205ENST00000307859 SPOPO43791 374 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 CABYRO75952 493 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 PROSCO94903 275 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 INHAP05111 366 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 VDRP11473 427 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 CD19P15391 556 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 GSCP56915 257 aaPredicted RBP12.6□□□□□ -0.39
TRIM40-205ENST00000307859 RNASE9P60153 205 aaKnown RBP12.6□□□□□ -0.39
TRIM40-205ENST00000307859 LONRF2Q1L5Z9 754 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 GLRA4Q5JXX5 417 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 DENND1BQ6P3S1 775 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 CPNE8Q86YQ8 564 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 HDAC7Q8WUI4 952 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 FAM122AQ96E09 287 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 NAP1L3Q99457 506 aaPredicted RBP12.6□□□□□ -0.39
TRIM40-205ENST00000307859 TRIM7Q9C029 511 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 RNF39Q9H2S5 420 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 CHST12Q9NRB3 414 aa12.6□□□□□ -0.39
TRIM40-205ENST00000307859 DMGDHQ9UI17 866 aaKnown RBP12.6□□□□□ -0.39
TRIM40-205ENST00000307859 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.6□□□□□ -0.39
TRIM40-205ENST00000307859 MYO1FO00160 1098 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 O00370 1275 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 RPS6KA5O75582 802 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 FGGP02679 453 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 CYP3A5P20815 502 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 TNFRSF8P28908 595 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 MAN1A1P33908 653 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 NDST1P52848 882 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 PTGISQ16647 500 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 TWF2Q6IBS0 349 aaKnown RBP12.59□□□□□ -0.39
TRIM40-205ENST00000307859 RNF180Q86T96 592 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 ARRDC4Q8NCT1 418 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 FEZF2Q8TBJ5 459 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 KRT12Q99456 494 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 FAM53CQ9NYF3 392 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 KLK14Q9P0G3 267 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 STIM2Q9P246 746 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 PARP2Q9UGN5 583 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 LCMT1Q9UIC8 334 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 KIAA1257Q9ULG3 409 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 ST3GAL5Q9UNP4 418 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 ALPK3Q96L96 1907 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 TSC2P49815 1807 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 KRIT1O00522 736 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 MICAL2O94851 1124 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 CTSHP09668 335 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 ATF7P17544 494 aaPredicted RBP12.59□□□□□ -0.39
TRIM40-205ENST00000307859 PNPLA4P41247 253 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 TAP1Q03518 808 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 ZNF211Q13398 564 aaPredicted RBP12.59□□□□□ -0.39
TRIM40-205ENST00000307859 ORC1Q13415 861 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 CNGA2Q16280 664 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 PTPN20Q4JDL3 420 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 PPP1R15BQ5SWA1 713 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 CCNI2Q6ZMN8 369 aaPredicted RBP12.59□□□□□ -0.39
TRIM40-205ENST00000307859 PHLDB2Q86SQ0 1253 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 ERICH1Q86X53 443 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 C3orf20Q8ND61 904 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms