RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TNFAIP3P21580 790 aa11.5□□□□□ -0.57
LSM3-201ENST00000306024 MAGEA8P43361 318 aa11.5□□□□□ -0.57
LSM3-201ENST00000306024 DNAJC3Q13217 504 aa11.5□□□□□ -0.57
LSM3-201ENST00000306024 MKRN4PQ13434 485 aaPredicted RBP11.5□□□□□ -0.57
LSM3-201ENST00000306024 FAM13CQ8NE31 585 aa11.5□□□□□ -0.57
LSM3-201ENST00000306024 FNBP1Q96RU3 617 aa11.5□□□□□ -0.57
LSM3-201ENST00000306024 APBA2Q99767 749 aa11.5□□□□□ -0.57
LSM3-201ENST00000306024 IQCGQ9H095 443 aaKnown RBP11.5□□□□□ -0.57
LSM3-201ENST00000306024 MYLK2Q9H1R3 596 aa11.5□□□□□ -0.57
LSM3-201ENST00000306024 BZW2Q9Y6E2 419 aaKnown RBP11.5□□□□□ -0.57
LSM3-201ENST00000306024 CFAP69A5D8W1 941 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 DHX15O43143 795 aaKnown RBP11.49□□□□□ -0.57
LSM3-201ENST00000306024 HBP1O60381 514 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 ZNF286BP0CG31 522 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 TPBGLP0DKB5 382 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 CAPN12Q6ZSI9 719 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 CCDC127Q96BQ5 260 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 NMD3Q96D46 503 aaKnown RBP11.49□□□□□ -0.57
LSM3-201ENST00000306024 RMDN2Q96LZ7 410 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 KIFC3Q9BVG8 833 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 TBC1D10AQ9BXI6 508 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 FAM192AQ9GZU8 254 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 RASA4BC9J798 803 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 RASA4O43374 803 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 HNRNPRO43390 633 aaKnown RBP11.49□□□□□ -0.57
LSM3-201ENST00000306024 KLRC4O43908 158 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 SUPT3HO75486 399 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 WFS1O76024 890 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 CBX6O95503 412 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 PLS3P13797 630 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 HNRNPH3P31942 346 aaKnown RBP11.49□□□□□ -0.57
LSM3-201ENST00000306024 ICAM3P32942 547 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 SP2Q02086 613 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 WASHC2DQ5SRD0 308 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 IQSEC1Q6DN90 963 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 EPM2AIP1Q7L775 607 aaPredicted RBP11.49□□□□□ -0.57
LSM3-201ENST00000306024 NLRP7Q8WX94 980 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 SIK3Q9Y2K2 1263 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 WDR91A4D1P6 747 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 SPAG7O75391 227 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 RARBP10826 455 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 ESRRAP11474 423 aaPredicted RBP11.49□□□□□ -0.57
LSM3-201ENST00000306024 STAT1P42224 750 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 MOGSQ13724 837 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 ALCAMQ13740 583 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 CCDC92Q53HC0 331 aaPredicted RBP11.49□□□□□ -0.57
LSM3-201ENST00000306024 FAM186BQ8IYM0 893 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 KIAA0895Q8NCT3 520 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 DNAJC19Q96DA6 116 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 TIPINQ9BVW5 301 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 PCMTD2Q9NV79 361 aa11.49□□□□□ -0.57
LSM3-201ENST00000306024 POC1B-GALNT4F8VUJ3 575 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 H3BRB1 525 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 PODXLO00592 558 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 RGS20O76081 388 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 NR3C1P04150 777 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 GHRHRQ02643 423 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 CLUL1Q15846 466 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 EXOC3L4Q17RC7 722 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 SGSM1Q2NKQ1 1148 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 ZCWPW2Q504Y3 356 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 C1orf186Q6ZWK4 172 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 RNF149Q8NC42 400 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 PLEKHG4BQ96PX9 1271 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 TUT1Q9H6E5 874 aaKnown RBP11.48□□□□□ -0.57
LSM3-201ENST00000306024 ZWILCHQ9H900 591 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 TYW1Q9NV66 732 aaKnown RBP11.48□□□□□ -0.57
LSM3-201ENST00000306024 LRRC42Q9Y546 428 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 SLC4A7Q9Y6M7 1214 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 MYH7BA7E2Y1 1941 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 A0A0G2JND7 137 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 GOLGA8IPA6NC78 632 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 GOLGA8JA6NMD2 632 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 M0QZ92 97 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 ALADP13716 330 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 CA4P22748 312 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 USP46P62068 366 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 PTK2Q05397 1052 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 SFSWAPQ12872 951 aaKnown RBP11.48□□□□□ -0.57
LSM3-201ENST00000306024 SLC44A4Q53GD3 710 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 ABHD15Q6UXT9 468 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 PPP4R3CPQ6ZMV5 832 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 TLK2Q86UE8 772 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 GLIS3Q8NEA6 775 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 NPLOC4Q8TAT6 608 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 PLVAPQ9BX97 442 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 SEMA6BQ9H3T3 888 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 METTL14Q9HCE5 456 aaKnown RBP11.48□□□□□ -0.57
LSM3-201ENST00000306024 CREBZFQ9NS37 354 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 ARIH2O95376 493 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 DHX34Q14147 1143 aaKnown RBP11.48□□□□□ -0.57
LSM3-201ENST00000306024 CCL14Q16627 93 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 RBM12BQ8IXT5 1001 aaKnown RBP11.48□□□□□ -0.57
LSM3-201ENST00000306024 C7orf31Q8N865 590 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 TPCN2Q8NHX9 752 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 RAB3IL1Q8TBN0 382 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 ASAP3Q8TDY4 903 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 ATP8B4Q8TF62 1192 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 TRAPPC12Q8WVT3 735 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 FAM161BQ96MY7 647 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms