RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 GCAP28676 217 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 BASP1P80723 227 aaKnown RBP22.48■■□□□ 1.19
TRIM28-201ENST00000253024 VSIG1Q86XK7 387 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 ACTL9Q8TC94 416 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 KLHL14Q9P2G3 628 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 HAO1Q9UJM8 370 aa22.48■■□□□ 1.19
TRIM28-201ENST00000253024 UBA1P22314 1058 aaKnown RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 PLEKHA7Q6IQ23 1121 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 WDTC1Q8N5D0 677 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 COPS5Q92905 334 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 TMEM109Q9BVC6 243 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 CNTNAP2Q9UHC6 1331 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 A0A0B4J269 797 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 C2orf71A6NGG8 1288 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 PMM2O15305 246 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 DNAJC8O75937 253 aaPredicted RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 FGFR1P11362 822 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 TCF7P36402 384 aaPredicted RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 SNRPFP62306 86 aaKnown RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 OTUD4Q01804 1114 aaKnown RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 MMRN1Q13201 1228 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 STXBP2Q15833 593 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 GJC2Q5T442 439 aaPredicted RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 SWT1Q5T5J6 900 aaKnown RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 KATNAL2Q8IYT4 538 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 KIAA0319LQ8IZA0 1049 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 SCYL3Q8IZE3 742 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 ANKLE1Q8NAG6 615 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 NQO1P15559 274 aaKnown RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 KRT4P19013 534 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 MMP8P22894 467 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 RXRBP28702 533 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 GBP2P32456 591 aaPredicted RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 LACTBP83111 547 aaPredicted RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 ARHGEF18Q6ZSZ5 1173 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 EXD1Q8NHP7 514 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 UBA3Q8TBC4 463 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 ZBED3Q96IU2 234 aaPredicted RBP22.47■■□□□ 1.19
TRIM28-201ENST00000253024 PCYT2Q99447 389 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 CYTH4Q9UIA0 394 aa22.47■■□□□ 1.19
TRIM28-201ENST00000253024 MYH9P35579 1960 aaKnown RBP22.46■■□□□ 1.19
TRIM28-201ENST00000253024 ZNF646O15015 1829 aaPredicted RBP22.46■■□□□ 1.19
TRIM28-201ENST00000253024 H0Y3Z8 333 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 PSTPIP1O43586 416 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 AVILO75366 819 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 CBX6O95503 412 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 FNBP1LQ5T0N5 605 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 FAM71DQ8N9W8 422 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 TRPM4Q8TD43 1214 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 CGRRF1Q99675 332 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 MAK16Q9BXY0 300 aaKnown RBP22.46■■□□□ 1.19
TRIM28-201ENST00000253024 GINM1Q9NU53 330 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 COL2A1P02458 1487 aaPredicted RBP22.46■■□□□ 1.19
TRIM28-201ENST00000253024 TMEM191CA6NGB0 347 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 FAM47DPA6NHR8 397 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 SPDYE16A6NNV3 312 aaPredicted RBP22.46■■□□□ 1.19
TRIM28-201ENST00000253024 SPATA31C2B4DYI2 1134 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 TMEM191BP0C7N4 346 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 MYBL1P10243 752 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 EZRP15311 586 aaKnown RBP22.46■■□□□ 1.19
TRIM28-201ENST00000253024 CETN2P41208 172 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 STAT5BP51692 787 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 TGFB2P61812 414 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 NETO2Q8NC67 525 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 REPS2Q8NFH8 660 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 MAIP1Q8WWC4 291 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 TRIM11Q96F44 468 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 FAM81BQ96LP2 452 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 ASCC2Q9H1I8 757 aaPredicted RBP22.46■■□□□ 1.19
TRIM28-201ENST00000253024 MYLK2Q9H1R3 596 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 IP6K2Q9UHH9 426 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 GINS2Q9Y248 185 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 ARL2BPQ9Y2Y0 163 aa22.46■■□□□ 1.19
TRIM28-201ENST00000253024 MGRN1O60291 552 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 SKAP2O75563 359 aaPredicted RBP22.45■■□□□ 1.18
TRIM28-201ENST00000253024 TJP3O95049 919 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 ATP5DP30049 168 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 CLCN3P51790 818 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 COPS2P61201 443 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 ZNF699Q32M78 642 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 HSDL1Q3SXM5 330 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 EEF1DP3Q658K8 133 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 NPHS2Q9NP85 383 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 DNALI1O14645 258 aaPredicted RBP22.45■■□□□ 1.18
TRIM28-201ENST00000253024 NEFHP12036 1026 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 CTCFP49711 727 aaPredicted RBP22.45■■□□□ 1.18
TRIM28-201ENST00000253024 PTPN20Q4JDL3 420 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 NCAPGQ9BPX3 1015 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 C17orf75Q9HAS0 396 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 METTL5Q9NRN9 209 aaKnown RBP22.45■■□□□ 1.18
TRIM28-201ENST00000253024 PIM2Q9P1W9 311 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 PHTF1Q9UMS5 762 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 CHMP2BQ9UQN3 213 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 SCINQ9Y6U3 715 aa22.45■■□□□ 1.18
TRIM28-201ENST00000253024 NFKBIEO00221 500 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 CXCL8P10145 99 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 TRIM56Q9BRZ2 755 aaKnown RBP22.44■■□□□ 1.18
TRIM28-201ENST00000253024 GHRP10912 638 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 ADRA1DP25100 572 aa22.44■■□□□ 1.18
TRIM28-201ENST00000253024 PSMC1P62191 440 aaKnown RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms