RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 FOPNLQ96NB1 174 aa10.85□□□□□ -0.67
NIPAL3-201ENST00000003912 SLC7A5P2Q9GIP4 190 aa10.85□□□□□ -0.67
NIPAL3-201ENST00000003912 AFF4Q9UHB7 1163 aaKnown RBP10.85□□□□□ -0.67
NIPAL3-201ENST00000003912 BCL9LQ86UU0 1499 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 FRMPD4Q14CM0 1322 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 KLRC2P26717 231 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 BTNL9Q6UXG8 535 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 TBC1D1Q86TI0 1168 aaPredicted RBP10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 TMEM176AQ96HP8 235 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 CYP4F11Q9HBI6 524 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 PAK5Q9P286 719 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 TTLL13PA6NNM8 815 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 CFAP99D6REC4 459 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 NR1D1P20393 614 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 CASP4P49662 377 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 MYL6P60660 151 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 UGP2Q16851 508 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 GJB7Q6PEY0 223 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 CENPKQ9BS16 269 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 OSBPL8Q9BZF1 889 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 SMIM24O75264 130 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 ATP1A1P05023 1023 aaKnown RBP10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 NCF2P19878 526 aaPredicted RBP10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 PCBP1Q15365 356 aaKnown RBP eCLIP10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 TMEM119Q4V9L6 283 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 MDH1BQ5I0G3 518 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 MIB1Q86YT6 1006 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 SYT15Q9BQS2 421 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 CINPQ9BW66 212 aaPredicted RBP10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 DDX43Q9NXZ2 648 aaKnown RBP10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 HDAC6Q9UBN7 1215 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 PHF2O75151 1096 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 APRTP07741 180 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 SETSIPP0DME0 302 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 TYK2P29597 1187 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 MTF1Q14872 753 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 POLD3Q15054 466 aaPredicted RBP10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 HERC6Q8IVU3 1022 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 GPATCH11Q8N954 259 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 FGD4Q96M96 766 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 RAB6BQ9NRW1 208 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 SNX12Q9UMY4 172 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 UBIAD1Q9Y5Z9 338 aa10.84□□□□□ -0.67
NIPAL3-201ENST00000003912 UMODL1Q5DID0 1318 aa10.83□□□□□ -0.67
NIPAL3-201ENST00000003912 SMAPO00193 183 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 PGK1P00558 417 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 COMTP21964 271 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 FGFR4P22455 802 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 AKAP5P24588 427 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 MAP4P27816 1152 aaKnown RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 BST2Q10589 180 aaKnown RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 PRAMEF19Q5SWL8 479 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 FAM171A1Q5VUB5 890 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 MTMR14Q8NCE2 650 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 SPATA18Q8TC71 538 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 ADAM2Q99965 735 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 TRAIPQ9BWF2 469 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 VCX3AQ9NNX9 186 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 MSRAQ9UJ68 235 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 LSM8O95777 96 aaKnown RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 HIST1H2AGP0C0S8 130 aaPredicted RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 HIST1H2ADP20671 130 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 ART3Q13508 389 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 KIF19Q2TAC6 998 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 ZNF507Q8TCN5 953 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 HIST1H2AHQ96KK5 128 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 HIST1H2AJQ99878 128 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 H2AFJQ9BTM1 129 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 GTSE1Q9NYZ3 720 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 FOXN3O00409 490 aaPredicted RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 XYLBO75191 536 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 HMGCRP04035 888 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 ETFBP38117 255 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 PTPN11Q06124 597 aaPredicted RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 MTA1Q13330 715 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 BYSLQ13895 437 aaKnown RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 CENPPQ6IPU0 288 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 EPM2AIP1Q7L775 607 aaPredicted RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 PLPPR4Q7Z2D5 763 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 MAML1Q92585 1016 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 FBXO44Q9H4M3 255 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 TLR8Q9NR97 1041 aaKnown RBP10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 CISHQ9NSE2 258 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 USH1CQ9Y6N9 552 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 YDJCA8MPS7 323 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 KIF3CO14782 793 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 NDUFS3O75489 264 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 MYO1DO94832 1006 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 SMIM10L2AP0DMW4 78 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 SMIM10L2BP0DMW5 78 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 KLK7P49862 253 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 MAP3K7CLP57077 242 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 TREML2Q5T2D2 321 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 CCNYL1Q8N7R7 359 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 TAS1R2Q8TE23 839 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 FTHL17Q9BXU8 183 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 INTS13Q9NVM9 706 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 SLC25A13Q9UJS0 675 aa10.83□□□□□ -0.68
NIPAL3-201ENST00000003912 CST8O60676 142 aa10.82□□□□□ -0.68
NIPAL3-201ENST00000003912 RNASEH1O60930 286 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms