RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	MYO1A	Q9UBC5	1043 aa		12.55	□□□□□ -0.4
CLN6-223	ENST00000637823	PUF60	Q9UHX1	559 aa	Known RBP	12.55	□□□□□ -0.4
CLN6-223	ENST00000637823	ABHD14A-ACY1	A0A1B0GW23	586 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	CASTOR2	A6NHX0	329 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	BTNL10	A8MVZ5	291 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	CYB561D2	O14569	222 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	KIF5C	O60282	957 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	ABL1	P00519	1130 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	FGFR1	P11362	822 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	VDR	P11473	427 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	TNNT1	P13805	278 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	NDST1	P52848	882 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	GALC	P54803	685 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	ETF1	P62495	437 aa	Known RBP	12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	DSC1	Q08554	894 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	CLEC16A	Q2KHT3	1053 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	ZNF394	Q53GI3	561 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	ACAD10	Q6JQN1	1059 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	ABI1	Q8IZP0	508 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	TMEM199	Q8N511	208 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	RNF10	Q8N5U6	811 aa	Known RBP	12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	VWCE	Q96DN2	955 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	FAM193B	Q96PV7	902 aa	Predicted RBP	12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	MRPL45	Q9BRJ2	306 aa	Known RBP	12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	NT5C1A	Q9BXI3	368 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	ELOVL4	Q9GZR5	314 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	PDCL3	Q9H2J4	239 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	SNX25	Q9H3E2	840 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	PRDM5	Q9NQX1	630 aa	Predicted RBP	12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	GUCA1B	Q9UMX6	200 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	PCDHGC3	Q9UN70	934 aa		12.54	□□□□□ -0.4
CLN6-223	ENST00000637823	ANKRD62	A6NC57	917 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	TMCO5B	A8MYB1	307 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	EFCAB14	O75071	495 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	LSM8	O95777	96 aa	Known RBP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	FTL	P02792	175 aa	Predicted RBP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	CYP1A1	P04798	512 aa	Predicted RBP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	PFKM	P08237	780 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	TMEM253	P0C7T8	217 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	CD19	P15391	556 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	WARS	P23381	471 aa	Known RBP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	GNL1	P36915	607 aa	Predicted RBP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	AARS	P49588	968 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	RNASEL	Q05823	741 aa	Known RBP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	STIL	Q15468	1287 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	CNGA2	Q16280	664 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	DNTTIP2	Q5QJE6	756 aa	Known RBP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	DSTYK	Q6XUX3	929 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	PALB2	Q86YC2	1186 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	COLGALT2	Q8IYK4	626 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	TMEM86A	Q8N2M4	240 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	OR6B3	Q8NGW1	331 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	TFAP2B	Q92481	460 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	SENP8	Q96LD8	212 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	HEXIM2	Q96MH2	286 aa	Known RBP	12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	CASD1	Q96PB1	797 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	PACSIN1	Q9BY11	444 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	ZNF518B	Q9C0D4	1074 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	TBC1D13	Q9NVG8	400 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	TAS2R14	Q9NYV8	317 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	L1RE1	Q9UN81	338 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	TFR2	Q9UP52	801 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	DUSP10	Q9Y6W6	482 aa		12.53	□□□□□ -0.4
CLN6-223	ENST00000637823	BRCA2	P51587	3418 aa		12.52	□□□□□ -0.4
CLN6-223	ENST00000637823		A0A0A6YYK5	440 aa	Predicted RBP	12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	ARHGEF37	A1IGU5	675 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	DDHD2	O94830	711 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	UNG	P13051	313 aa	Predicted RBP	12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	BRD2	P25440	801 aa	Known RBP	12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	ITGB8	P26012	769 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	GNG11	P61952	73 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	SGO2	Q562F6	1265 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	ZNF569	Q5MCW4	686 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	ZNF280B	Q86YH2	543 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	CRYBG2	Q8N1P7	616 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	PDCL2	Q8N4E4	241 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	C3orf58	Q8NDZ4	430 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	SPATA18	Q8TC71	538 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	KBTBD7	Q8WVZ9	684 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	SECISBP2L	Q93073	1101 aa	Known RBP	12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	CYFIP2	Q96F07	1278 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	VCPIP1	Q96JH7	1222 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	CALR3	Q96L12	384 aa	Known RBP	12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	TWNK	Q96RR1	684 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	ZSWIM1	Q9BR11	485 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	PAAF1	Q9BRP4	392 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	MRPL9	Q9BYD2	267 aa	Known RBP	12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	LHX5	Q9H2C1	402 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	CACNG4	Q9UBN1	327 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	TRIM10	Q9UDY6	481 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	HMGXB4	Q9UGU5	601 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823	STXBP5L	Q9Y2K9	1186 aa		12.52	□□□□□ -0.41
CLN6-223	ENST00000637823		A8MXQ7	604 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	TMEM189-UBE2V1	I3L0A0	370 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823		M0QZQ0	153 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	GABRD	O14764	452 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	B3GAT3	O94766	335 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	AMH	P03971	560 aa		12.51	□□□□□ -0.41

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