RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CREBRFQ8IUR6 639 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 CXorf38Q8TB03 319 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 RIPOR3Q96MK2 946 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 DZANK1Q9NVP4 752 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 MTRRQ9UBK8 725 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 CDY1Q9Y6F8 540 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 TRIOO75962 3097 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 TECTAO75443 2155 aa19.43■□□□□ 0.7
CLN3-239ENST00000628023 HUS1O60921 280 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 C4BPAP04003 597 aaKnown RBP19.42■□□□□ 0.7
CLN3-239ENST00000628023 CCDC192P0DO97 292 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 ERCC5P28715 1186 aaPredicted RBP19.42■□□□□ 0.7
CLN3-239ENST00000628023 MTHFRP42898 656 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 MXI1P50539 228 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 ARPP19P56211 112 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 MYL6P60660 151 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 TNNC1P63316 161 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 SIGLEC14Q08ET2 396 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 ZNF699Q32M78 642 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 ZACNQ401N2 412 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 C1orf220Q5T0J3 134 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 SCARA3Q6AZY7 606 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 ELMSAN1Q6PJG2 1045 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 SV2AQ7L0J3 742 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 PALB2Q86YC2 1186 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 BORCS6Q96GS4 357 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 PRRX2Q99811 253 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 IMPG2Q9BZV3 1241 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 TMEM8AQ9HCN3 771 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 BACE2Q9Y5Z0 518 aa19.42■□□□□ 0.7
CLN3-239ENST00000628023 LETM1O95202 739 aaPredicted RBP19.41■□□□□ 0.7
CLN3-239ENST00000628023 CST3P01034 146 aaPredicted RBP19.41■□□□□ 0.7
CLN3-239ENST00000628023 EPCAMP16422 314 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 ATICP31939 592 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 GTF2H1P32780 548 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 OR1D2P34982 312 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 CLCN4P51793 760 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 TYRO3Q06418 890 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 PPP3CAQ08209 521 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 PTPN21Q16825 1174 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 CT47A1Q5JQC4 288 aaPredicted RBP19.41■□□□□ 0.7
CLN3-239ENST00000628023 WSCD1Q658N2 575 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 KRT39Q6A163 491 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 CCDC150Q8NCX0 1101 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 MMS19Q96T76 1030 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 CLSTN3Q9BQT9 956 aa19.41■□□□□ 0.7
CLN3-239ENST00000628023 ADAM12O43184 909 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 HLA-DRAP01903 254 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 CYP11A1P05108 521 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 CPB1P15086 417 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 NHLH1Q02575 133 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 ATAT1Q5SQI0 421 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 ALYREFQ86V81 257 aaKnown RBP19.4■□□□□ 0.7
CLN3-239ENST00000628023 THEM5Q8N1Q8 247 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 TOP6BLQ8N6T0 577 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 CNOT6LQ96LI5 555 aaKnown RBP19.4■□□□□ 0.7
CLN3-239ENST00000628023 OXCT2Q9BYC2 517 aaPredicted RBP19.4■□□□□ 0.7
CLN3-239ENST00000628023 GDAP2Q9NXN4 497 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 NXF1Q9UBU9 619 aaKnown RBP19.4■□□□□ 0.7
CLN3-239ENST00000628023 DPP7Q9UHL4 492 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 FBXL5Q9UKA1 691 aa19.4■□□□□ 0.7
CLN3-239ENST00000628023 OR6C75A6NL08 312 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 TGM5O43548 720 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 OAZ2O95190 189 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 VNN1O95497 513 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 SP100P23497 879 aaPredicted RBP19.39■□□□□ 0.69
CLN3-239ENST00000628023 MRPL58Q14197 206 aaKnown RBP19.39■□□□□ 0.69
CLN3-239ENST00000628023 SGSM1Q2NKQ1 1148 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 WDR72Q3MJ13 1102 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 ZNF667Q5HYK9 610 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 RARS2Q5T160 578 aaKnown RBP19.39■□□□□ 0.69
CLN3-239ENST00000628023 C15orf39Q6ZRI6 1047 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 C11orf57Q6ZUT1 292 aaPredicted RBP19.39■□□□□ 0.69
CLN3-239ENST00000628023 FAM114A1Q8IWE2 563 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 ADGRF2Q8IZF7 708 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 TMEM86AQ8N2M4 240 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 PDCL2Q8N4E4 241 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 FBXL6Q8N531 539 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 TAS1R2Q8TE23 839 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 SLC22A17Q8WUG5 538 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 MAN1C1Q9NR34 630 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 MAGEC2Q9UBF1 373 aaPredicted RBP19.39■□□□□ 0.69
CLN3-239ENST00000628023 L1RE1Q9UN81 338 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 ZNF318Q5VUA4 2279 aa19.39■□□□□ 0.69
CLN3-239ENST00000628023 N4BP1O75113 896 aaKnown RBP19.38■□□□□ 0.69
CLN3-239ENST00000628023 STAU1O95793 577 aaKnown RBP19.38■□□□□ 0.69
CLN3-239ENST00000628023 SPATA31D3P0C874 917 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 P4HA1P13674 534 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 TSC2P49815 1807 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 MYL7Q01449 175 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 ROR1Q01973 937 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 RAB33AQ14088 237 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 NFKBIBQ15653 356 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 LIN9Q5TKA1 542 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 SLC8B1Q6J4K2 584 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 RSPO2Q6UXX9 243 aaPredicted RBP19.38■□□□□ 0.69
CLN3-239ENST00000628023 SCARA5Q6ZMJ2 495 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 SPATA31D4Q6ZUB0 917 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 SLC35C1Q96A29 364 aa19.38■□□□□ 0.69
CLN3-239ENST00000628023 MED15Q96RN5 788 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms