RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SAMSN1Q9NSI8 373 aaKnown RBP14.49□□□□□ -0.09
LINC00540-202ENST00000616974 HCFC1R1Q9NWW0 138 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 FBXW11Q9UKB1 542 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 SLC27A5Q9Y2P5 690 aa14.49□□□□□ -0.09
LINC00540-202ENST00000616974 PHACTR2O75167 634 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CYP11A1P05108 521 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 PDGFRBP09619 1106 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 EPB41P11171 864 aaKnown RBP14.48□□□□□ -0.09
LINC00540-202ENST00000616974 ADCY1Q08828 1119 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 RAB33AQ14088 237 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 SURF1Q15526 300 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 LEXMQ3ZCV2 418 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CCDC183Q5T5S1 534 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 ZNF280DQ6N043 979 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 LIMS2Q7Z4I7 341 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CREBRFQ8IUR6 639 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 MMS19Q96T76 1030 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CDCA3Q99618 268 aaPredicted RBP14.48□□□□□ -0.09
LINC00540-202ENST00000616974 GDAP2Q9NXN4 497 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CD207Q9UJ71 328 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 BACE2Q9Y5Z0 518 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 DENND4CQ5VZ89 1909 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 OBSL1O75147 1896 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CARNS1A5YM72 827 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CCL16O15467 120 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 ABLIM3O94929 683 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CLSTN1O94985 981 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 MBD3O95983 291 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CPB1P15086 417 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 ADGRF2Q8IZF7 708 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 APPL2Q8NEU8 664 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 GPR152Q8TDT2 470 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 ZNF560Q96MR9 790 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 MKNK1Q9BUB5 465 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 DNAJC25Q9H1X3 360 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 POMKQ9H5K3 350 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 RWDD2AQ9UIY3 292 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 COG5Q9UP83 839 aa14.48□□□□□ -0.09
LINC00540-202ENST00000616974 CCDC195A0A1B0GUA6 201 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 MAPK13O15264 365 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 N4BP1O75113 896 aaKnown RBP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 C8AP07357 584 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 PIK3CAP42336 1068 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 GPR15P49685 360 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 MCCD1P59942 119 aaPredicted RBP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 TRPC3Q13507 836 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 SLC39A12Q504Y0 691 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 USP37Q86T82 979 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 KHSRPQ92945 711 aaKnown RBP eCLIP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 TATDN2Q93075 761 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 TMEM30AQ9NV96 361 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 DDX43Q9NXZ2 648 aaKnown RBP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 ARMCX3Q9UH62 379 aaPredicted RBP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 MYBPHLA2RUH7 354 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 IKBKBO14920 756 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 SLC16A3O15427 465 aaKnown RBP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 ASS1P00966 412 aaKnown RBP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 KRT13P13646 458 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 TYMPP19971 482 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 ASPAP45381 313 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 MRPS5P82675 430 aaKnown RBP14.47□□□□□ -0.09
LINC00540-202ENST00000616974 LRMPQ12912 555 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 DUSP4Q13115 394 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 ZNF699Q32M78 642 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 CCDC40Q4G0X9 1142 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 SDHAF4Q5VUM1 108 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 MLKLQ8NB16 471 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 ZNF461Q8TAF7 563 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 CASP10Q92851 521 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 TWNKQ96RR1 684 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 CRTAC1Q9NQ79 661 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 GTF3C4Q9UKN8 822 aa14.47□□□□□ -0.09
LINC00540-202ENST00000616974 ANAPC1Q9H1A4 1944 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 MTMR11A4FU01 709 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 GABRDO14764 452 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 HUS1O60921 280 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 MXI1P50539 228 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 BMS1Q14692 1282 aaKnown RBP14.46□□□□□ -0.09
LINC00540-202ENST00000616974 FILIP1Q7Z7B0 1213 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 TRIM59Q8IWR1 403 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 SUSD6Q92537 303 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 KAT5Q92993 513 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 CNOT6LQ96LI5 555 aaKnown RBP14.46□□□□□ -0.09
LINC00540-202ENST00000616974 PKMYT1Q99640 499 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 HSD3B7Q9H2F3 369 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 CYP4F11Q9HBI6 524 aa14.46□□□□□ -0.09
LINC00540-202ENST00000616974 SYCE3A1L190 88 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 ATF2P15336 505 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 PNPLA4P41247 253 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 MYO1EQ12965 1108 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 ATXN2LQ8WWM7 1075 aaKnown RBP14.45□□□□□ -0.1
LINC00540-202ENST00000616974 CEP63Q96MT8 703 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 ADAM7Q9H2U9 754 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 TMEM8AQ9HCN3 771 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 STK39Q9UEW8 545 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 FRYLO94915 3013 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 TECTAO75443 2155 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 BICDL2A1A5D9 508 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 SPDYE4A6NLX3 237 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms