RNA–Protein interactions for RNA: ENST00000611725.4

SNX13-213, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 6,817 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-213ENST00000611725 LRRC38Q5VT99 294 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 MPZL3Q6UWV2 235 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 FASTKD5Q7L8L6 764 aaKnown RBP6.72□□□□□ -1.33
SNX13-213ENST00000611725 CNKSR2Q8WXI2 1034 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 KLC2Q9H0B6 622 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 COX16Q9P0S2 106 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 SLC12A6Q9UHW9 1150 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 NFASCO94856 1347 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 TCRBV7S2A1N4TA0A589 114 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 SMAPO00193 183 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 EIF4BP23588 611 aaKnown RBP6.72□□□□□ -1.33
SNX13-213ENST00000611725 PTPN11Q06124 597 aaPredicted RBP6.72□□□□□ -1.33
SNX13-213ENST00000611725 SMTNL2Q2TAL5 461 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 ATP13A4Q4VNC1 1196 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 LBX2Q6XYB7 198 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 NME8Q8N427 588 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 CEP120Q8N960 986 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 CCNYQ8ND76 341 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 LMO3Q8TAP4 145 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 CDKL2Q92772 493 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 RSAD1Q9HA92 442 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 PPCSQ9HAB8 311 aa6.72□□□□□ -1.33
SNX13-213ENST00000611725 PDE4DIPQ5VU43 2346 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 IQANK1A0A1B0GTG1 560 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 WDR91A4D1P6 747 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 TDRD10Q5VZ19 366 aaKnown RBP6.71□□□□□ -1.33
SNX13-213ENST00000611725 EFCAB12Q6NXP0 572 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 SPOCD1Q6ZMY3 1216 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 PDZD4Q76G19 769 aaPredicted RBP6.71□□□□□ -1.33
SNX13-213ENST00000611725 PPM1NQ8N819 430 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 RNF34Q969K3 372 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 MMP19Q99542 508 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 LRRC4Q9HBW1 653 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 KLC4Q9NSK0 619 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 GGT7Q9UJ14 662 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 PPP2R3BQ9Y5P8 575 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 CFAP69A5D8W1 941 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 A8MXQ7 604 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 CSDE1O75534 798 aaKnown RBP6.71□□□□□ -1.33
SNX13-213ENST00000611725 ALDH5A1P51649 535 aaPredicted RBP6.71□□□□□ -1.33
SNX13-213ENST00000611725 MAMLD1Q13495 774 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 CYP4A22Q5TCH4 519 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 RPAINQ86UA6 219 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 RNF169Q8NCN4 708 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 STMN2Q93045 179 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 GRAMD1AQ96CP6 724 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 CAMKK2Q96RR4 588 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 KLF6Q99612 283 aaPredicted RBP6.71□□□□□ -1.33
SNX13-213ENST00000611725 TXLNGQ9NUQ3 528 aa6.71□□□□□ -1.33
SNX13-213ENST00000611725 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 STIP1P31948 543 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 VCPP55072 806 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 EIF3EP60228 445 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 NAA25Q14CX7 972 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 ZNF449Q6P9G9 518 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 TRPM8Q7Z2W7 1104 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 KATNAL2Q8IYT4 538 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 SPATA18Q8TC71 538 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 TRAPPC12Q8WVT3 735 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 TBC1D31Q96DN5 1066 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 DDX20Q9UHI6 824 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 SHOC2Q9UQ13 582 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 CICQ96RK0 1608 aaPredicted RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 GLI3P10071 1580 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 MARF1Q9Y4F3 1742 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 RPTORQ8N122 1335 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 RPL7AP62424 266 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 OTUD4Q01804 1114 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 ACTN3Q08043 901 aaPredicted RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 LAMTOR4Q0VGL1 99 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 PCGF5Q86SE9 256 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 ARHGAP24Q8N264 748 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 FAF2Q96CS3 445 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 KIF12Q96FN5 646 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 C12orf42Q96LP6 360 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 TRIM55Q9BYV6 548 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 SNX25Q9H3E2 840 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 DHX33Q9H6R0 707 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 NOD1Q9Y239 953 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 STXBP5LQ9Y2K9 1186 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 NFKBIEO00221 500 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 IL18RAPO95256 599 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 CXCL8P10145 99 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 EEF1DP3Q658K8 133 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 ARMCX2Q7L311 632 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 PACS2Q86VP3 889 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 ANKMY2Q8IV38 441 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 FBXO16Q8IX29 292 aaPredicted RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 TEPSINQ96N21 525 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 NT5C1AQ9BXI3 368 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 FAM49BQ9NUQ9 324 aa6.71□□□□□ -1.34
SNX13-213ENST00000611725 R3HDM2Q9Y2K5 976 aaKnown RBP6.71□□□□□ -1.34
SNX13-213ENST00000611725 A0A0G2JND7 137 aa6.7□□□□□ -1.34
SNX13-213ENST00000611725 MTA2O94776 668 aa6.7□□□□□ -1.34
SNX13-213ENST00000611725 SHBGP04278 402 aa6.7□□□□□ -1.34
SNX13-213ENST00000611725 ITGB3P05106 788 aa6.7□□□□□ -1.34
SNX13-213ENST00000611725 MMP8P22894 467 aa6.7□□□□□ -1.34
SNX13-213ENST00000611725 RGS7P49802 495 aa6.7□□□□□ -1.34
SNX13-213ENST00000611725 ZNF280AP59817 542 aaPredicted RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms