RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 ELOVL4Q9GZR5 314 aa17.23■□□□□ 0.35
SS18-226ENST00000585241 HAUS4Q9H6D7 363 aa17.23■□□□□ 0.35
SS18-226ENST00000585241 HMGXB4Q9UGU5 601 aa17.23■□□□□ 0.35
SS18-226ENST00000585241 ADAM28Q9UKQ2 775 aa17.23■□□□□ 0.35
SS18-226ENST00000585241 DSEQ9UL01 958 aa17.23■□□□□ 0.35
SS18-226ENST00000585241 PCDHB8Q9UN66 801 aa17.23■□□□□ 0.35
SS18-226ENST00000585241 PRG3Q9Y2Y8 225 aaPredicted RBP17.23■□□□□ 0.35
SS18-226ENST00000585241 INSL6Q9Y581 213 aa17.23■□□□□ 0.35
SS18-226ENST00000585241 MRPL42Q9Y6G3 142 aaKnown RBP17.23■□□□□ 0.35
SS18-226ENST00000585241 SYN3O14994 580 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 TRAPPC3O43617 180 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 PLEKP08567 350 aaPredicted RBP17.22■□□□□ 0.35
SS18-226ENST00000585241 SKILP12757 684 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 CYP11B1P15538 503 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 ATP2A2P16615 1042 aaKnown RBP17.22■□□□□ 0.35
SS18-226ENST00000585241 USP8P40818 1118 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 RGS19P49795 217 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 NDST1P52848 882 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 ARID5AQ03989 594 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 PTK2Q05397 1052 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 ELAVL2Q12926 359 aaKnown RBP17.22■□□□□ 0.35
SS18-226ENST00000585241 TDRD12Q587J7 1177 aaKnown RBP17.22■□□□□ 0.35
SS18-226ENST00000585241 C9orf50Q5SZB4 431 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 WSCD1Q658N2 575 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 ZNF571Q7Z3V5 609 aaPredicted RBP17.22■□□□□ 0.35
SS18-226ENST00000585241 SLC47A2Q86VL8 602 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 OSTM1Q86WC4 334 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 ZNF677Q86XU0 584 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 RNF168Q8IYW5 571 aaPredicted RBP17.22■□□□□ 0.35
SS18-226ENST00000585241 SLC4A11Q8NBS3 891 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 DDX1Q92499 740 aaKnown RBP17.22■□□□□ 0.35
SS18-226ENST00000585241 RAD9AQ99638 391 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 NT5C1AQ9BXI3 368 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 NHEJ1Q9H9Q4 299 aaPredicted RBP17.22■□□□□ 0.35
SS18-226ENST00000585241 STXBP5LQ9Y2K9 1186 aa17.22■□□□□ 0.35
SS18-226ENST00000585241 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.22■□□□□ 0.354e-6■■■□□ 17.6
SS18-226ENST00000585241 SOWAHDA6NJG2 315 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 EIF4A3P38919 411 aaKnown RBP17.21■□□□□ 0.35
SS18-226ENST00000585241 LHX1P48742 406 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 ALDH7A1P49419 539 aaKnown RBP17.21■□□□□ 0.35
SS18-226ENST00000585241 PDE6CP51160 858 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 FUT10Q6P4F1 479 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 KCNT2Q6UVM3 1135 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 RAD9BQ6WBX8 426 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 NOP9Q86U38 636 aaKnown RBP17.21■□□□□ 0.35
SS18-226ENST00000585241 TMEM173Q86WV6 379 aaPredicted RBP17.21■□□□□ 0.35
SS18-226ENST00000585241 GPIHBP1Q8IV16 184 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 SLC39A11Q8N1S5 342 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 COLGALT1Q8NBJ5 622 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 HASPINQ8TF76 798 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 BCL7CQ8WUZ0 217 aaPredicted RBP17.21■□□□□ 0.35
SS18-226ENST00000585241 CLP1Q92989 425 aaKnown RBP17.21■□□□□ 0.35
SS18-226ENST00000585241 TMEM176AQ96HP8 235 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 ZNF830Q96NB3 372 aaPredicted RBP17.21■□□□□ 0.35
SS18-226ENST00000585241 ZNF558Q96NG5 402 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 NENFQ9UMX5 172 aa17.21■□□□□ 0.35
SS18-226ENST00000585241 SF3B1O75533 1304 aaKnown RBP eCLIP17.21■□□□□ 0.344e-6■■■■■ 96
SS18-226ENST00000585241 KIAA1671Q9BY89 1806 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 I3L4J1 428 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 TADA2AO75478 443 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 LCA5LO95447 670 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 FGFR3P22607 806 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 GNA15P30679 374 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 GNL1P36915 607 aaPredicted RBP17.2■□□□□ 0.34
SS18-226ENST00000585241 CDR2Q01850 454 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 BMS1Q14692 1282 aaKnown RBP17.2■□□□□ 0.34
SS18-226ENST00000585241 CRYBG2Q8N1P7 616 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 OR6B3Q8NGW1 331 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 SLC30A5Q8TAD4 765 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 TRIM44Q96DX7 344 aaPredicted RBP17.2■□□□□ 0.34
SS18-226ENST00000585241 IGSF21Q96ID5 467 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 AGPAT1Q99943 283 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 ACP6Q9NPH0 428 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 KIAA1257Q9ULG3 409 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 CEP290O15078 2479 aa17.2■□□□□ 0.34
SS18-226ENST00000585241 VWA8A3KMH1 1905 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 A8MXQ7 604 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 EIF3CLB5ME19 914 aaKnown RBP17.19■□□□□ 0.34
SS18-226ENST00000585241 OAZ2O95190 189 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 VDRP11473 427 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 CHRNB2P17787 502 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 CYLC1P35663 651 aaPredicted RBP17.19■□□□□ 0.34
SS18-226ENST00000585241 PBX3P40426 434 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 KIF11P52732 1056 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 FMO1Q01740 532 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 MRPL58Q14197 206 aaKnown RBP17.19■□□□□ 0.34
SS18-226ENST00000585241 MTF1Q14872 753 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 SHHQ15465 462 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 ZNF394Q53GI3 561 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.19■□□□□ 0.34
SS18-226ENST00000585241 METTL23Q86XA0 190 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 FIBCD1Q8N539 461 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 LNX1Q8TBB1 728 aaPredicted RBP17.19■□□□□ 0.34
SS18-226ENST00000585241 SLC20A1Q8WUM9 679 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 RNPC3Q96LT9 517 aaKnown RBP17.19■□□□□ 0.34
SS18-226ENST00000585241 CCDC42Q96M95 316 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 EIF3CQ99613 913 aaKnown RBP17.19■□□□□ 0.34
SS18-226ENST00000585241 RTP3Q9BQQ7 232 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 ZSWIM1Q9BR11 485 aa17.19■□□□□ 0.34
SS18-226ENST00000585241 ZBED2Q9BTP6 218 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms