RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 ZNF70Q9UC06 446 aaPredicted RBP5.37□□□□□ -1.55
SMCHD1-208ENST00000583344 LRRC14BA6NHZ5 514 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 F5H697 171 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 NR2F6P10588 404 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 CHRM3P20309 590 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 MALP21145 153 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 NDUFV1P49821 464 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 SOX10P56693 466 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 SNAPC2Q13487 334 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 UAP1L1Q3KQV9 507 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 FAM153CQ494X1 144 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 TMEM119Q4V9L6 283 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 SYDE2Q5VT97 1194 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 EGFLAMQ63HQ2 1017 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 PPP4R3AQ6IN85 833 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 SLC4A10Q6U841 1118 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 RFKQ969G6 155 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 PBKQ96KB5 322 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 ETAA1Q9NY74 926 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 CC2D2AQ9P2K1 1620 aa5.36□□□□□ -1.55
SMCHD1-208ENST00000583344 EIF4G1Q04637 1599 aaKnown RBP5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 BICRAQ9NZM4 1560 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 NT5C1B-RDH14C9J2C7 533 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 GCOM1H8Y6P7 765 aaPredicted RBP5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 TTLL1O95922 423 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 ANXA1P04083 346 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 EBLN1P0CF75 366 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 CDK11BP21127 795 aaKnown RBP5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 DRD4P21917 467 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 ZNF135P52742 658 aaPredicted RBP5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 TFF2Q03403 129 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 MTMR1Q13613 665 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 SRSF7Q16629 238 aaKnown RBP eCLIP5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 TAF2Q6P1X5 1199 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 ZNF782Q6ZMW2 699 aaPredicted RBP5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 PSD4Q8NDX1 1056 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 SCAMP4Q969E2 229 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 MTMR8Q96EF0 704 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 ACTRT3Q9BYD9 372 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 TPSD1Q9BZJ3 242 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 BRD9Q9H8M2 597 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 SLAMF7Q9NQ25 335 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 DKK3Q9UBP4 350 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 SERGEFQ9UGK8 458 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 PADI4Q9UM07 663 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 AGAP1Q9UPQ3 857 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 ATP8A1Q9Y2Q0 1164 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 KAT6AQ92794 2004 aa5.35□□□□□ -1.55
SMCHD1-208ENST00000583344 WIZO95785 1651 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 BAZ1AQ9NRL2 1556 aaPredicted RBP5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 TNIKQ9UKE5 1360 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 LINC01548A6NM66 108 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 VPS4BO75351 444 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 GJB1P08034 283 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 PCSK6P29122 969 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 PHKA1P46020 1223 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 DSC2Q02487 901 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 EZH2Q15910 746 aaKnown RBP5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 PDSS2Q86YH6 399 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 FKBP10Q96AY3 582 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 C1orf43Q9BWL3 253 aa5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 CFAP20Q9Y6A4 193 aaKnown RBP5.34□□□□□ -1.55
SMCHD1-208ENST00000583344 EEA1Q15075 1411 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 SHTN1A0MZ66 631 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 PRSS29PA6NIE9 313 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 KRTAP29-1A8MX34 341 aaPredicted RBP5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 GABRDO14764 452 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 KATNA1O75449 491 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 CENPBP07199 599 aaPredicted RBP5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 HNRNPCP07910 306 aaKnown RBP eCLIP5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 GNAI3P08754 354 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 CCT8P50990 548 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 GNAI1P63096 354 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 ITKQ08881 620 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 RBM20Q5T481 1227 aaKnown RBP5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 VGLL2Q8N8G2 317 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 AMBRA1Q9C0C7 1298 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 MRFAP1Q9Y605 127 aa5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 SETD1BQ9UPS6 1966 aaKnown RBP5.33□□□□□ -1.56
SMCHD1-208ENST00000583344 SPATA31A3Q5VYP0 1347 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 TRIAP1O43715 76 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 KIF20AO95235 890 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 PDHA1P08559 390 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 ZFXP17010 805 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 ITGB6P18564 788 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 CDKN1CP49918 316 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 GUCY2FP51841 1108 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 SLC10A2Q12908 348 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 EIF2B5Q13144 721 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 HABP2Q14520 560 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 ODF1Q14990 250 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 LLGL1Q15334 1064 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 TBCCQ15814 346 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 VPS53Q5VIR6 699 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 ZNF425Q6IV72 752 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 TTC7BQ86TV6 843 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 PNMA8AQ86V59 439 aaPredicted RBP5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 PUS7Q96PZ0 661 aaKnown RBP5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 OSBPL9Q96SU4 736 aa5.32□□□□□ -1.56
SMCHD1-208ENST00000583344 CNPPD1Q9BV87 410 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms