RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 GDF15Q99988 308 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 ELOVL4Q9GZR5 314 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 HAUS4Q9H6D7 363 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 HMGXB4Q9UGU5 601 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 ADAM28Q9UKQ2 775 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 DSEQ9UL01 958 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 PCDHB8Q9UN66 801 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 PRG3Q9Y2Y8 225 aaPredicted RBP17.23■□□□□ 0.35
SS18-211ENST00000578954 INSL6Q9Y581 213 aa17.23■□□□□ 0.35
SS18-211ENST00000578954 MRPL42Q9Y6G3 142 aaKnown RBP17.23■□□□□ 0.35
SS18-211ENST00000578954 SYN3O14994 580 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 TRAPPC3O43617 180 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 PLEKP08567 350 aaPredicted RBP17.22■□□□□ 0.35
SS18-211ENST00000578954 SKILP12757 684 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 CYP11B1P15538 503 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 ATP2A2P16615 1042 aaKnown RBP17.22■□□□□ 0.35
SS18-211ENST00000578954 USP8P40818 1118 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 RGS19P49795 217 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 NDST1P52848 882 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 ARID5AQ03989 594 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 PTK2Q05397 1052 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 ELAVL2Q12926 359 aaKnown RBP17.22■□□□□ 0.35
SS18-211ENST00000578954 TDRD12Q587J7 1177 aaKnown RBP17.22■□□□□ 0.35
SS18-211ENST00000578954 C9orf50Q5SZB4 431 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 WSCD1Q658N2 575 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 ZNF571Q7Z3V5 609 aaPredicted RBP17.22■□□□□ 0.35
SS18-211ENST00000578954 SLC47A2Q86VL8 602 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 OSTM1Q86WC4 334 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 ZNF677Q86XU0 584 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 RNF168Q8IYW5 571 aaPredicted RBP17.22■□□□□ 0.35
SS18-211ENST00000578954 SLC4A11Q8NBS3 891 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 DDX1Q92499 740 aaKnown RBP17.22■□□□□ 0.35
SS18-211ENST00000578954 RAD9AQ99638 391 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 NT5C1AQ9BXI3 368 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 NHEJ1Q9H9Q4 299 aaPredicted RBP17.22■□□□□ 0.35
SS18-211ENST00000578954 STXBP5LQ9Y2K9 1186 aa17.22■□□□□ 0.35
SS18-211ENST00000578954 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.22■□□□□ 0.354e-6■■■□□ 17.6
SS18-211ENST00000578954 SOWAHDA6NJG2 315 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 EIF4A3P38919 411 aaKnown RBP17.21■□□□□ 0.35
SS18-211ENST00000578954 LHX1P48742 406 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 ALDH7A1P49419 539 aaKnown RBP17.21■□□□□ 0.35
SS18-211ENST00000578954 PDE6CP51160 858 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 FUT10Q6P4F1 479 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 KCNT2Q6UVM3 1135 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 RAD9BQ6WBX8 426 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 NOP9Q86U38 636 aaKnown RBP17.21■□□□□ 0.35
SS18-211ENST00000578954 TMEM173Q86WV6 379 aaPredicted RBP17.21■□□□□ 0.35
SS18-211ENST00000578954 GPIHBP1Q8IV16 184 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 SLC39A11Q8N1S5 342 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 COLGALT1Q8NBJ5 622 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 HASPINQ8TF76 798 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 BCL7CQ8WUZ0 217 aaPredicted RBP17.21■□□□□ 0.35
SS18-211ENST00000578954 CLP1Q92989 425 aaKnown RBP17.21■□□□□ 0.35
SS18-211ENST00000578954 TMEM176AQ96HP8 235 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 ZNF830Q96NB3 372 aaPredicted RBP17.21■□□□□ 0.35
SS18-211ENST00000578954 ZNF558Q96NG5 402 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 NENFQ9UMX5 172 aa17.21■□□□□ 0.35
SS18-211ENST00000578954 SF3B1O75533 1304 aaKnown RBP eCLIP17.21■□□□□ 0.344e-6■■■■■ 96
SS18-211ENST00000578954 KIAA1671Q9BY89 1806 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 I3L4J1 428 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 TADA2AO75478 443 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 LCA5LO95447 670 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 FGFR3P22607 806 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 GNA15P30679 374 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 GNL1P36915 607 aaPredicted RBP17.2■□□□□ 0.34
SS18-211ENST00000578954 CDR2Q01850 454 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 BMS1Q14692 1282 aaKnown RBP17.2■□□□□ 0.34
SS18-211ENST00000578954 CRYBG2Q8N1P7 616 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 OR6B3Q8NGW1 331 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 SLC30A5Q8TAD4 765 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 TRIM44Q96DX7 344 aaPredicted RBP17.2■□□□□ 0.34
SS18-211ENST00000578954 IGSF21Q96ID5 467 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 AGPAT1Q99943 283 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 ACP6Q9NPH0 428 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 KIAA1257Q9ULG3 409 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 CEP290O15078 2479 aa17.2■□□□□ 0.34
SS18-211ENST00000578954 VWA8A3KMH1 1905 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 A8MXQ7 604 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 EIF3CLB5ME19 914 aaKnown RBP17.19■□□□□ 0.34
SS18-211ENST00000578954 OAZ2O95190 189 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 VDRP11473 427 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 CHRNB2P17787 502 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 CYLC1P35663 651 aaPredicted RBP17.19■□□□□ 0.34
SS18-211ENST00000578954 PBX3P40426 434 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 KIF11P52732 1056 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 FMO1Q01740 532 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 MRPL58Q14197 206 aaKnown RBP17.19■□□□□ 0.34
SS18-211ENST00000578954 MTF1Q14872 753 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 SHHQ15465 462 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 ZNF394Q53GI3 561 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.19■□□□□ 0.34
SS18-211ENST00000578954 METTL23Q86XA0 190 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 FIBCD1Q8N539 461 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 LNX1Q8TBB1 728 aaPredicted RBP17.19■□□□□ 0.34
SS18-211ENST00000578954 SLC20A1Q8WUM9 679 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 RNPC3Q96LT9 517 aaKnown RBP17.19■□□□□ 0.34
SS18-211ENST00000578954 CCDC42Q96M95 316 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 EIF3CQ99613 913 aaKnown RBP17.19■□□□□ 0.34
SS18-211ENST00000578954 RTP3Q9BQQ7 232 aa17.19■□□□□ 0.34
SS18-211ENST00000578954 ZSWIM1Q9BR11 485 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms