RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SCARA5Q6ZMJ2 495 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 GBP6Q6ZN66 633 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 ANKS3Q6ZW76 656 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 DPH6Q7L8W6 267 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 LIMS2Q7Z4I7 341 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 ADGRD2Q7Z7M1 963 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 OSTM1Q86WC4 334 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 METTL23Q86XA0 190 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 TOP6BLQ8N6T0 577 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 CCDC150Q8NCX0 1101 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 MRPL38Q96DV4 380 aaKnown RBP9.18□□□□□ -0.94
NUP88-211ENST00000575976 NAP1L5Q96NT1 182 aaPredicted RBP9.18□□□□□ -0.94
NUP88-211ENST00000575976 MRPL45Q9BRJ2 306 aaKnown RBP9.18□□□□□ -0.94
NUP88-211ENST00000575976 SMYD3Q9H7B4 428 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 RXFP1Q9HBX9 757 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 NGRNQ9NPE2 291 aaKnown RBP9.18□□□□□ -0.94
NUP88-211ENST00000575976 GCNT4Q9P109 453 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 DSEQ9UL01 958 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 SSX2IPQ9Y2D8 614 aa9.18□□□□□ -0.94
NUP88-211ENST00000575976 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.17□□□□□ -0.94
NUP88-211ENST00000575976 ARHGEF37A1IGU5 675 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 C2orf71A6NGG8 1288 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 H7C4K7 107 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 GABRDO14764 452 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 ADAM12O43184 909 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 TEX33O43247 280 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 HCRTO43612 131 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 TBC1D4O60343 1298 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 TACC1O75410 805 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 OAZ2O95190 189 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 SERPINC1P01008 464 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 CNPP09543 421 aaKnown RBP9.17□□□□□ -0.94
NUP88-211ENST00000575976 WEE2P0C1S8 567 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 FAM163BP0C2L3 166 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 P4HA1P13674 534 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 RPL17P18621 184 aaKnown RBP9.17□□□□□ -0.94
NUP88-211ENST00000575976 POU3F3P20264 500 aaPredicted RBP9.17□□□□□ -0.94
NUP88-211ENST00000575976 IGFBP4P22692 258 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 WARSP23381 471 aaKnown RBP9.17□□□□□ -0.94
NUP88-211ENST00000575976 ASPAP45381 313 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 APBA1Q02410 837 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 UBXN1Q04323 297 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 BMS1Q14692 1282 aaKnown RBP9.17□□□□□ -0.94
NUP88-211ENST00000575976 PSMD5Q16401 504 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 FILIP1LQ4L180 1135 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 CTXN3Q4LDR2 81 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 FKBP15Q5T1M5 1219 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 OVOS1Q6IE37 1185 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 PHLDB3Q6NSJ2 640 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 GJB7Q6PEY0 223 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 GLYCTKQ8IVS8 523 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 ARHGEF19Q8IW93 802 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 GPR65Q8IYL9 337 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 ADGRF2Q8IZF7 708 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 THEM5Q8N1Q8 247 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 KBTBD7Q8WVZ9 684 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 KAT5Q92993 513 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 FAXDC2Q96IV6 333 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 NT5C1BQ96P26 610 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 KLHL5Q96PQ7 755 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 TMEM209Q96SK2 561 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 RTP3Q9BQQ7 232 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 CLSTN3Q9BQT9 956 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 BCO2Q9BYV7 579 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 NIF3L1Q9GZT8 377 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 SIX2Q9NPC8 291 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 DDX43Q9NXZ2 648 aaKnown RBP9.17□□□□□ -0.94
NUP88-211ENST00000575976 LMCD1Q9NZU5 365 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 MTRRQ9UBK8 725 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 FBXL5Q9UKA1 691 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 NME7Q9Y5B8 376 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 BACE2Q9Y5Z0 518 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 IRAK3Q9Y616 596 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 MTCH2Q9Y6C9 303 aa9.17□□□□□ -0.94
NUP88-211ENST00000575976 COL4A4P53420 1690 aaPredicted RBP9.16□□□□□ -0.94
NUP88-211ENST00000575976 VWA8A3KMH1 1905 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 A0A1B0GTH6 734 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 PER2O15055 1255 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 TEX28O15482 410 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 PDGFRBP09619 1106 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 OR4Q2P0C623 313 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 ACAT1P24752 427 aaKnown RBP9.16□□□□□ -0.94
NUP88-211ENST00000575976 LMO2P25791 158 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 LHX1P48742 406 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 KLK7P49862 253 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 ARPP19P56211 112 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 UBASH3AP57075 661 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 CUL2Q13617 745 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 NR1I3Q14994 352 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 SYCP1Q15431 976 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 PTPN21Q16825 1174 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 TCEAL5Q5H9L2 206 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 ZNF280DQ6N043 979 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 DPY19L2P1Q6NXN4 242 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 PDXDC1Q6P996 788 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 TRIM65Q6PJ69 517 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 RRAGAQ7L523 313 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 RBM23Q86U06 439 aaKnown RBP9.16□□□□□ -0.94
NUP88-211ENST00000575976 TMEM86AQ8N2M4 240 aa9.16□□□□□ -0.94
NUP88-211ENST00000575976 PPM1KQ8N3J5 372 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms