RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 TRIM71Q2Q1W2 868 aaKnown RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 VWA3BQ502W6 1294 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 TMTC4Q5T4D3 741 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 C1QTNF12Q5T7M4 302 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 DCAF12L1Q5VU92 463 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 FAM205BPQ63HN1 556 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 RAP1GAP2Q684P5 730 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 TMEM200BQ69YZ2 307 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 ACAD10Q6JQN1 1059 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 ZC3H14Q6PJT7 736 aaKnown RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 CRTC1Q6UUV9 634 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 CCDC129Q6ZRS4 1044 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 KIAA0408Q6ZU52 694 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 CD163Q86VB7 1156 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 KRT73Q86Y46 540 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 ZDHHC13Q8IUH4 622 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 PLXDC1Q8IUK5 500 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 SLC44A2Q8IWA5 706 aaPredicted RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 TRMT2AQ8IZ69 625 aaKnown RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 TMEM57Q8N5G2 664 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 ANKRD52Q8NB46 1076 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 OR1N1Q8NGS0 311 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 TDRD7Q8NHU6 1098 aaKnown RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 SCAMP5Q8TAC9 235 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 CXorf38Q8TB03 319 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 CSGALNACT1Q8TDX6 532 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 MYLIPQ8WY64 445 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 THAP4Q8WY91 577 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 ST8SIA4Q92187 359 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 CFHR4Q92496 578 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 GFM2Q969S9 779 aaKnown RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 SPSB4Q96A44 273 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 ZUFSPQ96AP4 578 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 SDCCAG3Q96C92 435 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 TRAPPC9Q96Q05 1148 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 RSF1Q96T23 1441 aaPredicted RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 RBM15Q96T37 977 aaKnown RBP eCLIP2.38□□□□□ -2.03
CHD3-217ENST00000574022 RTKNQ9BST9 563 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 AP1M1Q9BXS5 423 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 PACSIN1Q9BY11 444 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 GPR63Q9BZJ6 419 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 MS4A7Q9GZW8 240 aaPredicted RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 PAIP1Q9H074 479 aaKnown RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 ALDH8A1Q9H2A2 487 aaPredicted RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 CCDC68Q9H2F9 335 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 SEMA6BQ9H3T3 888 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 PRDM8Q9NQV8 689 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 PRDM7Q9NQW5 492 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 ZSCAN32Q9NX65 697 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 ING3Q9NXR8 418 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 NSMCE4AQ9NXX6 385 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 RGS17Q9UGC6 210 aaPredicted RBP2.38□□□□□ -2.03
CHD3-217ENST00000574022 CDC42EP3Q9UKI2 254 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 SLC5A6Q9Y289 635 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 PLEKHM1Q9Y4G2 1056 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 HS3ST4Q9Y661 456 aa2.38□□□□□ -2.03
CHD3-217ENST00000574022 A0A087WWL8 130 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 LOC102723971A0A1B0GUV8 181 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 TCRBV7S2A1N4TA0A589 114 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 PI4KAP2A4QPH2 592 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 SYNDIG1LA6NDD5 238 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 B4DLN1 442 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 KIAA0391O15091 583 aaKnown RBP2.37□□□□□ -2.03
CHD3-217ENST00000574022 DOK2O60496 412 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 COQ9O75208 318 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 SLC43A1O75387 559 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 DNAJB5O75953 348 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 KRT38O76015 456 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 KLHL18O94889 574 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 NTSR2O95665 410 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 GLP2RO95838 553 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 ANXA1P04083 346 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 TK1P04183 234 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 RPN1P04843 607 aaKnown RBP2.37□□□□□ -2.03
CHD3-217ENST00000574022 GRPP07492 148 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 SRGAP2BP0DMP2 458 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 CKBP12277 381 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 NCAM1P13591 858 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 PECAM1P16284 738 aaPredicted RBP2.37□□□□□ -2.03
CHD3-217ENST00000574022 TPH1P17752 444 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 EGR1P18146 543 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 ACVR2AP27037 513 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 ATICP31939 592 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 GDNFP39905 211 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 KIR2DL3P43628 341 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 ALDH1A3P47895 512 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 NPTX2P47972 431 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 POLD2P49005 469 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 CPT1AP50416 773 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 CCR5P51681 352 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 STAT5BP51692 787 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 KCNQ1P51787 676 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 SEC24CP53992 1094 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 ALDH18A1P54886 795 aaKnown RBP2.37□□□□□ -2.03
CHD3-217ENST00000574022 ARF3P61204 181 aaPredicted RBP2.37□□□□□ -2.03
CHD3-217ENST00000574022 PSMC1P62191 440 aaKnown RBP2.37□□□□□ -2.03
CHD3-217ENST00000574022 ARF1P84077 181 aaKnown RBP2.37□□□□□ -2.03
CHD3-217ENST00000574022 DUSP2Q05923 314 aa2.37□□□□□ -2.03
CHD3-217ENST00000574022 CACNB2Q08289 660 aaPredicted RBP2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms