RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SV2CQ496J9 727 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 SASS6Q6UVJ0 657 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 INTS8Q75QN2 995 aaKnown RBP18.57■□□□□ 0.56
CLN3-217ENST00000565354 RNF168Q8IYW5 571 aaPredicted RBP18.57■□□□□ 0.56
CLN3-217ENST00000565354 C1orf127Q8N9H9 656 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 OR5B17Q8NGF7 314 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 EEF2KMTQ96G04 330 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLN3-217ENST00000565354 IGSF9Q9P2J2 1179 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 DOCK8Q8NF50 2099 aa18.57■□□□□ 0.56
CLN3-217ENST00000565354 EPG5Q9HCE0 2579 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 ANO9A1A5B4 782 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 PIRO00625 290 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 PPEF2O14830 753 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 FGFR1OPO95684 399 aaKnown RBP18.56■□□□□ 0.56
CLN3-217ENST00000565354 IGFBP6P24592 240 aaPredicted RBP18.56■□□□□ 0.56
CLN3-217ENST00000565354 KLRC2P26717 231 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 VAMP7P51809 220 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 AP3M2P53677 418 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 BFSP1Q12934 665 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 BIRC3Q13489 604 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 TRPC3Q13507 836 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 PSMD5Q16401 504 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 TPD52L1Q16890 204 aaPredicted RBP18.56■□□□□ 0.56
CLN3-217ENST00000565354 RTP2Q5QGT7 225 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 CD300LGQ6UXG3 332 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 C15orf39Q6ZRI6 1047 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 APPL2Q8NEU8 664 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 TMC2Q8TDI7 906 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 PARD3BQ8TEW8 1205 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 RMDN1Q96DB5 314 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 FAM84AQ96KN4 292 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 SUSD3Q96L08 255 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 MKNK1Q9BUB5 465 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 CHST7Q9NS84 486 aa18.56■□□□□ 0.56
CLN3-217ENST00000565354 TPRP12270 2363 aaKnown RBP18.56■□□□□ 0.56
CLN3-217ENST00000565354 PTPRJQ12913 1337 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 LRRIQ3A6PVS8 624 aaPredicted RBP18.55■□□□□ 0.56
CLN3-217ENST00000565354 SYN3O14994 580 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 SLC16A3O15427 465 aaKnown RBP18.55■□□□□ 0.56
CLN3-217ENST00000565354 NARSO43776 548 aaKnown RBP18.55■□□□□ 0.56
CLN3-217ENST00000565354 EFEMP2O95967 443 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 ADH1AP07327 375 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 ODC1P11926 461 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 TKTP29401 623 aaKnown RBP18.55■□□□□ 0.56
CLN3-217ENST00000565354 CLCN4P51793 760 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 LILRA4P59901 499 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 MYO1EQ12965 1108 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 CCDC40Q4G0X9 1142 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 KIAA0319Q5VV43 1072 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 CAVIN1Q6NZI2 390 aaKnown RBP18.55■□□□□ 0.56
CLN3-217ENST00000565354 PRSS55Q6UWB4 352 aaPredicted RBP18.55■□□□□ 0.56
CLN3-217ENST00000565354 TRAPPC11Q7Z392 1133 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 GLYCTKQ8IVS8 523 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 CEP63Q96MT8 703 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 KLHL5Q96PQ7 755 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 MMRN2Q9H8L6 949 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 WNT16Q9UBV4 365 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 PCDHB8Q9UN66 801 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 CACNA1IQ9P0X4 2223 aa18.55■□□□□ 0.56
CLN3-217ENST00000565354 MED19A0JLT2 244 aaPredicted RBP18.54■□□□□ 0.56
CLN3-217ENST00000565354 H7C4K7 107 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 STK25O00506 426 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 CNPP09543 421 aaKnown RBP18.54■□□□□ 0.56
CLN3-217ENST00000565354 FGFR3P22607 806 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 TCERG1LQ5VWI1 586 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 TTI2Q6NXR4 508 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 ANKS3Q6ZW76 656 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 METTL23Q86XA0 190 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 GPR65Q8IYL9 337 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 LRRC52Q8N7C0 313 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 PLEKHO2Q8TD55 490 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 PIK3R5Q8WYR1 880 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 SENP8Q96LD8 212 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 RWDD2AQ9UIY3 292 aa18.54■□□□□ 0.56
CLN3-217ENST00000565354 KRBA1A5PL33 1030 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 KPNA7A9QM74 516 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 STX10O60499 249 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 N4BP1O75113 896 aaKnown RBP18.53■□□□□ 0.56
CLN3-217ENST00000565354 CFHP08603 1231 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 TRIM49P0CI25 452 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 TRIM49CP0CI26 452 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 DLG4P78352 724 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 DPCR1Q3MIW9 517 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 DCAF17Q5H9S7 520 aaPredicted RBP18.53■□□□□ 0.56
CLN3-217ENST00000565354 VARS2Q5ST30 1063 aaKnown RBP18.53■□□□□ 0.56
CLN3-217ENST00000565354 ZNF280DQ6N043 979 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 FOXR2Q6PJQ5 311 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 DGLUCYQ7Z3D6 616 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 FILIP1Q7Z7B0 1213 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 KIAA2013Q8IYS2 634 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 CMASQ8NFW8 434 aaPredicted RBP18.53■□□□□ 0.56
CLN3-217ENST00000565354 RXFP1Q9HBX9 757 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 METTL14Q9HCE5 456 aaKnown RBP18.53■□□□□ 0.56
CLN3-217ENST00000565354 TMEM63CQ9P1W3 806 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 FNIP2Q9P278 1114 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 ARMCX3Q9UH62 379 aaPredicted RBP18.53■□□□□ 0.56
CLN3-217ENST00000565354 R4GN57 208 aa18.53■□□□□ 0.56
CLN3-217ENST00000565354 M0QZQ0 153 aa18.52■□□□□ 0.56
CLN3-217ENST00000565354 CYB561D2O14569 222 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms