RNA–Protein interactions for RNA: ENST00000564845.5

CHD9-213, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 11,504 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-213ENST00000564845 SMARCB1Q12824 385 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 CCDC62Q6P9F0 684 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 BTNL9Q6UXG8 535 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 TSEN2Q8NCE0 465 aaKnown RBP3.54□□□□□ -1.84
CHD9-213ENST00000564845 CCDC126Q96EE4 140 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 FAXDC2Q96IV6 333 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 PRRG3Q9BZD7 231 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 EPB41L5Q9HCM4 733 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 PRKAG2Q9UGJ0 569 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 AOC2O75106 756 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 UCHL3P15374 230 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 ERCC5P28715 1186 aaPredicted RBP3.54□□□□□ -1.84
CHD9-213ENST00000564845 TFAMQ00059 246 aaKnown RBP3.54□□□□□ -1.84
CHD9-213ENST00000564845 MAPK11Q15759 364 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 TAF12Q16514 161 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 EXOC3L4Q17RC7 722 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 ISLR2Q6UXK2 745 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 TMC2Q8TDI7 906 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 SCG3Q8WXD2 468 aaKnown RBP3.54□□□□□ -1.84
CHD9-213ENST00000564845 ZNF516Q92618 1163 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 LPPQ93052 612 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 KCTD10Q9H3F6 313 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 CTTNBP2NLQ9P2B4 639 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 RLFQ13129 1914 aa3.54□□□□□ -1.84
CHD9-213ENST00000564845 H7C1D1 291 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 NR3C2P08235 984 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 RGS7P49802 495 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TSPY1Q01534 308 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 HIC1Q14526 733 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 DRAP1Q14919 205 aaPredicted RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 FAM47CQ5HY64 1035 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 CEP85LQ5SZL2 805 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 FAM160B1Q5W0V3 765 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 ARHGEF18Q6ZSZ5 1173 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TCP11Q8WWU5 503 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 C18orf8Q96DM3 657 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 NACC1Q96RE7 527 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 PAAF1Q9BRP4 392 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 MTFR1LQ9H019 292 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 ALG13Q9NP73 1137 aaKnown RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 DNAJC12Q9UKB3 198 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TRIM33Q9UPN9 1127 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 SYNGAP1Q96PV0 1343 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TAF4O00268 1085 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 IKBKBO14920 756 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 SPTLC1O15269 473 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 PCK1P35558 622 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 HADHAP40939 763 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 SUGP1Q8IWZ8 645 aaKnown RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 C7orf31Q8N865 590 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 RNF149Q8NC42 400 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 FIZ1Q96SL8 496 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 B3GNT5Q9BYG0 378 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 GCOM2Q9BZD3 368 aaPredicted RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 PCDHA2Q9Y5H9 948 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 ZNF839A8K0R7 811 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TRAPPC3O43617 180 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 DCTN3O75935 186 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 NR3C1P04150 777 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TFE3P19532 575 aaPredicted RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 ATICP31939 592 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 POLGP54098 1239 aaPredicted RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 CREMQ03060 361 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 GABPB1Q06547 395 aaPredicted RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 ITGADQ13349 1161 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 ZCWPW2Q504Y3 356 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 RDM1Q8NG50 284 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 PXMP2Q9NR77 195 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 COL4A3BPQ9Y5P4 624 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 INO80B-WBP1J3KQ70 363 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 PSMD10O75832 226 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 PDGFRBP09619 1106 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 ELNP15502 786 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 YARSP54577 528 aaKnown RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 RAD23BP54727 409 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 BACE1P56817 501 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 NFX1Q12986 1120 aaKnown RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 LRRC8EQ6NSJ5 796 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 FAM186BQ8IYM0 893 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 RNF168Q8IYW5 571 aaPredicted RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 PPP1R14CQ8TAE6 165 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 GRAMD1AQ96CP6 724 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 CCDC138Q96M89 665 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 MXRA8Q9BRK3 442 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 AZI2Q9H6S1 392 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 SETD4Q9NVD3 440 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 NMRK1Q9NWW6 199 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TSR3Q9UJK0 312 aaKnown RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 SERPINA10Q9UK55 444 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 POLR2AP24928 1970 aaKnown RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 SPDYE16A6NNV3 312 aaPredicted RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 TRIM66O15016 1216 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 HOXA2O43364 376 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 ALDH1A1P00352 501 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 TCP1P17987 556 aaKnown RBP3.53□□□□□ -1.84
CHD9-213ENST00000564845 CCNE1P24864 410 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 SUPT20HL1Q3ZLR7 823 aa3.53□□□□□ -1.84
CHD9-213ENST00000564845 DCAF12L1Q5VU92 463 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms