RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SLC27A5Q9Y2P5 690 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 MIA3Q5JRA6 1907 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 COL4A2P08572 1712 aa18.6■□□□□ 0.57
VPS9D1-203ENST00000563798 KPNA7A9QM74 516 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 ARNTLO00327 626 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 PPP6R2O75170 966 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 GCNT3O95395 438 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 CD72P21854 359 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 WEE1P30291 646 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 PNPLA4P41247 253 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 VIPR2P41587 438 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 GRM2Q14416 872 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 SV2CQ496J9 727 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 ZC3H14Q6PJT7 736 aaKnown RBP18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 ITIH5Q86UX2 942 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 METTL23Q86XA0 190 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 ADSSL1Q8N142 457 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 THEM5Q8N1Q8 247 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 SNX21Q969T3 373 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 ZNF560Q96MR9 790 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 PYM1Q9BRP8 204 aaKnown RBP18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 MKNK1Q9BUB5 465 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 TMEM206Q9H813 350 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 PANK4Q9NVE7 773 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 TBC1D7Q9P0N9 293 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 SCN1AP35498 2009 aa18.59■□□□□ 0.57
VPS9D1-203ENST00000563798 NCANO14594 1321 aa18.58■□□□□ 0.57
VPS9D1-203ENST00000563798 FANCMQ8IYD8 2048 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 A0A1W2PRU2 124 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 LMNAP02545 664 aaKnown RBP18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 PDIA4P13667 645 aaKnown RBP18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 IDEP14735 1019 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 WNT7BP56706 349 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 FCHO2Q0JRZ9 810 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 E2F4Q16254 413 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 WSCD1Q658N2 575 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 GAREM2Q75VX8 874 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 TTC9BQ8N6N2 239 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 CXorf38Q8TB03 319 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 SPPL2BQ8TCT7 592 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 NELL1Q92832 810 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 FAM213AQ9BRX8 229 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 FGFBP2Q9BYJ0 223 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 PANK2Q9BZ23 570 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 LRRC27Q9C0I9 530 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 TNMDQ9H2S6 317 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 CUEDC2Q9H467 287 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 KBTBD4Q9NVX7 518 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 OBP2AQ9NY56 170 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 R4GN57 208 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 CACNA1IQ9P0X4 2223 aa18.58■□□□□ 0.56
VPS9D1-203ENST00000563798 GVINP1Q7Z2Y8 2422 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 HEPACAM2A8MVW5 462 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 KIAA0391O15091 583 aaKnown RBP18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 LAMTOR5O43504 91 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 EXTL3O43909 919 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 GDI1P31150 447 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 STK38Q15208 465 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 SLC39A12Q504Y0 691 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 CNNM4Q6P4Q7 775 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 LRRTM3Q86VH5 581 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 CCDC65Q8IXS2 484 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 LRRC52Q8N7C0 313 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 C1orf127Q8N9H9 656 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 ZSWIM2Q8NEG5 633 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 CACTINQ8WUQ7 758 aaKnown RBP18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 RSPRY1Q96DX4 576 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 MSANTD3Q96H12 275 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 IER2Q9BTL4 223 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 SPATA6Q9NWH7 488 aaPredicted RBP18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 PATJQ8NI35 1801 aa18.57■□□□□ 0.56
VPS9D1-203ENST00000563798 ZNF263O14978 683 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 SPTLC2O15270 562 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 CHADO15335 359 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 YEATS4O95619 227 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 HAPLN1P10915 354 aaPredicted RBP18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 ATF6P18850 670 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 C1orf228Q6PIY5 440 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 ARID3BQ8IVW6 561 aaPredicted RBP18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 DCP1BQ8IZD4 617 aaKnown RBP18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 SYCP3Q8IZU3 236 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 SPATA18Q8TC71 538 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 SAAL1Q96ER3 474 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 ZNF396Q96N95 335 aaPredicted RBP18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 CBWD1Q9BRT8 395 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 IL21Q9HBE4 155 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 GDAP2Q9NXN4 497 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 RBAKQ9NYW8 714 aaPredicted RBP18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 ZMYM5Q9UJ78 669 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 ITGA11Q9UKX5 1188 aa18.56■□□□□ 0.56
VPS9D1-203ENST00000563798 ZNF292O60281 2723 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 SOAT2O75908 522 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 PRPF6O94906 941 aaKnown RBP18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 GABRR2P28476 465 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 TFAMQ00059 246 aaKnown RBP18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 VEPH1Q14D04 833 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 STXBP4Q6ZWJ1 553 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 PDILTQ8N807 584 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 ZBTB44Q8NCP5 570 aa18.55■□□□□ 0.56
VPS9D1-203ENST00000563798 LEO1Q8WVC0 666 aaPredicted RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms