RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 RLIMQ9NVW2 624 aa4.36□□□□□ -1.71
HMGB1P33-201ENST00000563485 CFAP97Q9P2B7 532 aa4.36□□□□□ -1.71
HMGB1P33-201ENST00000563485 ST3GAL5Q9UNP4 418 aa4.36□□□□□ -1.71
HMGB1P33-201ENST00000563485 COL4A3BPQ9Y5P4 624 aa4.36□□□□□ -1.71
HMGB1P33-201ENST00000563485 F5H697 171 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 VPS4BO75351 444 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 WT1P19544 449 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 GPD1P21695 349 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 RECQLP46063 649 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 NXPH1P58417 271 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 ITIH3Q06033 890 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 FOXF2Q12947 444 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 HNRNPA0Q13151 305 aaKnown RBP4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 NOGQ13253 232 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 HABP2Q14520 560 aaPredicted RBP4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 TAF2Q6P1X5 1199 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 HEATR3Q7Z4Q2 680 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 AMIGO2Q86SJ2 522 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 PSD4Q8NDX1 1056 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 RGMAQ96B86 450 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 CNPPD1Q9BV87 410 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 ABCF2Q9UG63 623 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 ADAM21Q9UKJ8 722 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 POLHQ9Y253 713 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 NR2E3Q9Y5X4 410 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 SPATA31A3Q5VYP0 1347 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 ADGRA2Q96PE1 1338 aa4.35□□□□□ -1.71
HMGB1P33-201ENST00000563485 DTNBO60941 627 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 SNUPNO95149 360 aaKnown RBP4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 KIF20AO95235 890 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 CHEK2O96017 543 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 FTLP02792 175 aaPredicted RBP4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 FTH1P19P0C7X4 201 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 RARBP10826 455 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 PDCP20941 246 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 ITPKBP27987 946 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 HK3P52790 923 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 KIF22Q14807 665 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 CATIPQ7Z7H3 387 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 RASAL3Q86YV0 1011 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 SRRM1Q8IYB3 904 aaKnown RBP4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 PRR18Q8N4B5 295 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 SH2D3CQ8N5H7 860 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 TNPO1Q92973 898 aaKnown RBP4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 ACTRT3Q9BYD9 372 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 TPSD1Q9BZJ3 242 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 TINAGL1Q9GZM7 467 aaPredicted RBP4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 KLC4Q9NSK0 619 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 FEZ2Q9UHY8 353 aaPredicted RBP4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 SPEF1Q9Y4P9 236 aa4.34□□□□□ -1.71
HMGB1P33-201ENST00000563485 CGB1A6NKQ9 187 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 M0QYG6 137 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 SLC16A6O15403 523 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 TRIAP1O43715 76 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 URI1O94763 535 aaPredicted RBP4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 ARIH2O95376 493 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 NR2F6P10588 404 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 CDK4P11802 303 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 TOB1P50616 345 aaPredicted RBP4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 MAP2K6P52564 334 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 BRDTQ58F21 947 aaPredicted RBP4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 TMEM240Q5SV17 173 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 RBM20Q5T481 1227 aaKnown RBP4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 USP45Q70EL2 814 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 PPP1R3BQ86XI6 285 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 CAMKK1Q8N5S9 505 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 RFKQ969G6 155 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 PBKQ96KB5 322 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 HAPLN3Q96S86 360 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 OSBPL9Q96SU4 736 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 AMBRA1Q9C0C7 1298 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 MRPL46Q9H2W6 279 aaKnown RBP4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 WDCPQ9H6R7 721 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 LMBRD1Q9NUN5 540 aa4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 SETD1BQ9UPS6 1966 aaKnown RBP4.33□□□□□ -1.72
HMGB1P33-201ENST00000563485 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 WIPF3A6NGB9 483 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 MANSC4A6NHS7 340 aaPredicted RBP4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 IL33O95760 270 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 AHSGP02765 367 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 POU2F2P09086 479 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 EXOSC10Q01780 885 aaKnown RBP4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 TCF15Q12870 199 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 BOP1Q14137 746 aaKnown RBP4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 THEMIS2Q5TEJ8 643 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 PPP1R32Q7Z5V6 425 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 CPA6Q8N4T0 437 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 FKBP10Q96AY3 582 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 HOMER2Q9NSB8 354 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 DKK3Q9UBP4 350 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 ZDHHC8Q9ULC8 765 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 LUC7L2Q9Y383 392 aaKnown RBP4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 WNT6Q9Y6F9 365 aa4.32□□□□□ -1.72
HMGB1P33-201ENST00000563485 GCOM1H8Y6P7 765 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 INO80B-WBP1J3KQ70 363 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 SOAT2O75908 522 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 TTLL1O95922 423 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 PDHA1P08559 390 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 EBLN1P0CF75 366 aa4.31□□□□□ -1.72
HMGB1P33-201ENST00000563485 TYRP14679 529 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms