RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MTRF1LQ9UGC7 380 aaKnown RBP7.98□□□□□ -1.13
VPS39-204ENST00000561818 GTF2IRD1Q9UHL9 959 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 SALL4Q9UJQ4 1053 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 L1RE1Q9UN81 338 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 NUB1Q9Y5A7 615 aa7.98□□□□□ -1.13
VPS39-204ENST00000561818 LACTBL1A8MY62 500 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 GPR25O00155 361 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 MAP2K7O14733 419 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 PEX10O60683 326 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 SRGAP2O75044 1071 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 PHF2O75151 1096 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 RNF8O76064 485 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 HEXIM1O94992 359 aaKnown RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 TJP3O95049 919 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 ABL1P00519 1130 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 FGGP02679 453 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 ITGB3P05106 788 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 C6orf222P0C671 652 aaPredicted RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 COMTP21964 271 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 RPL9P32969 192 aaKnown RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 CYP2C19P33261 490 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 TNFSF9P41273 254 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 AARSP49588 968 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS39-204ENST00000561818 TAF6P49848 677 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 EIF3BP55884 814 aaKnown RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 RBM10P98175 930 aaKnown RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 PTK7Q13308 1070 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 MESDQ14696 234 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 CYP1B1Q16678 543 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 KIZQ2M2Z5 673 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 SLC10A6Q3KNW5 377 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 GNASQ5JWF2 1037 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 FBXO47Q5MNV8 452 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 TAF3Q5VWG9 929 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 NAA35Q5VZE5 725 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 CCNI2Q6ZMN8 369 aaPredicted RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 ILDR2Q71H61 639 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 RCOR2Q8IZ40 523 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 TOP6BLQ8N6T0 577 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 OLIG1Q8TAK6 271 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 FAM71BQ8TC56 605 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 TRAPPC12Q8WVT3 735 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 KAT2BQ92831 832 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 CD101Q93033 1021 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 C18orf8Q96DM3 657 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 DDX27Q96GQ7 796 aaKnown RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 PHF12Q96QT6 1004 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 PI4K2AQ9BTU6 479 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 APOBEC3GQ9HC16 384 aaKnown RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 OSGEPQ9NPF4 335 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 XPNPEP3Q9NQH7 507 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 GDF3Q9NR23 364 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS39-204ENST00000561818 PCYOX1Q9UHG3 505 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 DSEQ9UL01 958 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 PIN4Q9Y237 131 aaKnown RBP7.97□□□□□ -1.13
VPS39-204ENST00000561818 GIT1Q9Y2X7 761 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 TELO2Q9Y4R8 837 aa7.97□□□□□ -1.13
VPS39-204ENST00000561818 ZNF487B1APH4 448 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 DDX3YO15523 660 aaKnown RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 B4GALT5O43286 388 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 GALR2O43603 387 aaPredicted RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 HSF2BPO75031 334 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 NPTXRO95502 500 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 NFICP08651 508 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 COL6A1P12109 1028 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 CD19P15391 556 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 LRPAP1P30533 357 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 PCK1P35558 622 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 TNNT3P45378 269 aaPredicted RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 GABRB2P47870 512 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 ZNF135P52742 658 aaPredicted RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 BCAT1P54687 386 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 VSNL1P62760 191 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 DR1Q01658 176 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 C2orf54Q08AI8 447 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 CALCOCO2Q13137 446 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 MAMLD1Q13495 774 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 CASP8Q14790 479 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 SLMAPQ14BN4 828 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 MAPRE1Q15691 268 aaKnown RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 ZBTB6Q15916 424 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 ZBTB41Q5SVQ8 909 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 EEF1DP3Q658K8 133 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 ARHGAP17Q68EM7 881 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 DRICH1Q6PGQ1 229 aaPredicted RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 LCLAT1Q6UWP7 414 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 ALKAL1Q6UXT8 129 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 PAXIP1Q6ZW49 1069 aaPredicted RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 SERINC5Q86VE9 423 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 MAP7D3Q8IWC1 876 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 CCDC89Q8N998 374 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 NOA1Q8NC60 698 aaKnown RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 ARRDC4Q8NCT1 418 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 SEC14L1Q92503 715 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 KAT5Q92993 513 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 GLT1D1Q96MS3 346 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 TBCBQ99426 244 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 OSMRQ99650 979 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 FTHL17Q9BXU8 183 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms