RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CHD9Q3L8U1 2897 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 SPDYE4A6NLX3 237 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 HIDE1A8MVS5 230 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 TEX28O15482 410 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 SERPINC1P01008 464 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 CNPP09543 421 aaKnown RBP10.78□□□□□ -0.68
USP3-216ENST00000559873 RFX1P22670 979 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 WARSP23381 471 aaKnown RBP10.78□□□□□ -0.68
USP3-216ENST00000559873 ASPAP45381 313 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 NRIP1P48552 1158 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 MRPL58Q14197 206 aaKnown RBP10.78□□□□□ -0.68
USP3-216ENST00000559873 MAPRE1Q15691 268 aaKnown RBP10.78□□□□□ -0.68
USP3-216ENST00000559873 DUSP6Q16828 381 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 TCEAL5Q5H9L2 206 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 LIN9Q5TKA1 542 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 WSCD1Q658N2 575 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 SMYD5Q6GMV2 418 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 SLC8B1Q6J4K2 584 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 SCARA5Q6ZMJ2 495 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 ENOSF1Q7L5Y1 443 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 TAS1R1Q7RTX1 841 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 DCP1BQ8IZD4 617 aaKnown RBP10.78□□□□□ -0.68
USP3-216ENST00000559873 OR6B3Q8NGW1 331 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 C2orf15Q8WU43 125 aaKnown RBP10.78□□□□□ -0.68
USP3-216ENST00000559873 CASP10Q92851 521 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 TNIP3Q96KP6 325 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 ACBD6Q9BR61 282 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 PI4K2AQ9BTU6 479 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 INTS2Q9H0H0 1204 aaKnown RBP10.78□□□□□ -0.68
USP3-216ENST00000559873 SMYD3Q9H7B4 428 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 DZANK1Q9NVP4 752 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 DDX43Q9NXZ2 648 aaKnown RBP10.78□□□□□ -0.68
USP3-216ENST00000559873 FBXL5Q9UKA1 691 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 MAFFQ9ULX9 164 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 TSC2P49815 1807 aa10.78□□□□□ -0.68
USP3-216ENST00000559873 MYO7AQ13402 2215 aa10.77□□□□□ -0.68
USP3-216ENST00000559873 LGALS16A8MUM7 142 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 A8MXQ7 604 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 LILRB3O75022 631 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 RPL17P18621 184 aaKnown RBP10.77□□□□□ -0.69
USP3-216ENST00000559873 IGFBP6P24592 240 aaPredicted RBP10.77□□□□□ -0.69
USP3-216ENST00000559873 OR1D2P34982 312 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 ROR1Q01973 937 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 GCNT1Q02742 428 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 CUL2Q13617 745 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 RAB33AQ14088 237 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 NFE2Q16621 373 aaPredicted RBP10.77□□□□□ -0.69
USP3-216ENST00000559873 SOWAHAQ2M3V2 549 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 MIIPQ5JXC2 388 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 TPGS2Q68CL5 300 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 SPOPLQ6IQ16 392 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 TRIM65Q6PJ69 517 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 RBM23Q86U06 439 aaKnown RBP10.77□□□□□ -0.69
USP3-216ENST00000559873 UNC93AQ86WB7 457 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 PPM1KQ8N3J5 372 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 EFHBQ8N7U6 833 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 EHBP1Q8NDI1 1231 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 HDAC7Q8WUI4 952 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 SEMA4DQ92854 862 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 SYT15Q9BQS2 421 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 BCO2Q9BYV7 579 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 VPS16Q9H269 839 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 HSD3B7Q9H2F3 369 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 APEX2Q9UBZ4 518 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 CDH9Q9ULB4 789 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 POLIQ9UNA4 740 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 STXBP5LQ9Y2K9 1186 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 DAAM1Q9Y4D1 1078 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 PCDHGC5Q9Y5F6 944 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 VWA8A3KMH1 1905 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 CHD7Q9P2D1 2997 aa10.77□□□□□ -0.69
USP3-216ENST00000559873 LRRC10BA6NIK2 292 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 GABRDO14764 452 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 CBFA2T2O43439 604 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 CLASP2O75122 1294 aaKnown RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 ATP1A3P13637 1013 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 ELF1P32519 619 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 GNL1P36915 607 aaPredicted RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 CLCN4P51793 760 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 MFAP3P55082 362 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 ARPP19P56211 112 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 UBXN1Q04323 297 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 INCA1Q0VD86 236 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 LRMPQ12912 555 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 PLD1Q13393 1074 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 SKIV2LQ15477 1246 aaKnown RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 INTS6LQ5JSJ4 861 aaKnown RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 C4orf50Q6ZRC1 276 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 CCDC149Q6ZUS6 474 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 LIMS2Q7Z4I7 341 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 ADGRD2Q7Z7M1 963 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 GLYCTKQ8IVS8 523 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 RNF214Q8ND24 703 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 KBTBD7Q8WVZ9 684 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 JAKMIP2Q96AA8 810 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 PCMTD1Q96MG8 357 aaPredicted RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 CLSTN3Q9BQT9 956 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 MRPL45Q9BRJ2 306 aaKnown RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 CRACR2AQ9BSW2 395 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 NT5C1AQ9BXI3 368 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms