RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SPTLC1O15269 473 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 EFEMP2O95967 443 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 C1RP00736 705 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 ADH1AP07327 375 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 CCDC172P0C7W6 258 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 FOSL2P15408 326 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 SLC9A1P19634 815 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 TKTP29401 623 aaKnown RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 CA8P35219 290 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 KCNMA1Q12791 1236 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 LRMPQ12912 555 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 CUL2Q13617 745 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 SYCP1Q15431 976 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 MAPRE1Q15691 268 aaKnown RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 PSMD5Q16401 504 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 CTXN3Q4LDR2 81 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 VARS2Q5ST30 1063 aaKnown RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 KIAA0319Q5VV43 1072 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 WSCD1Q658N2 575 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 TMEM173Q86WV6 379 aaPredicted RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 DCP1BQ8IZD4 617 aaKnown RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 PDCL2Q8N4E4 241 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 ANP32BQ92688 251 aaKnown RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 TATDN2Q93075 761 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 MRPL38Q96DV4 380 aaKnown RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 FAM84AQ96KN4 292 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 TNIP3Q96KP6 325 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 NAP1L5Q96NT1 182 aaPredicted RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 GAS2L1Q99501 681 aaPredicted RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 TCF25Q9BQ70 676 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 ACBD6Q9BR61 282 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 XPO4Q9C0E2 1151 aaKnown RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 ZBP1Q9H171 429 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 TTYH1Q9H313 450 aaPredicted RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 DPP7Q9UHL4 492 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 FBXL5Q9UKA1 691 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 KIAA1257Q9ULG3 409 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 MAFFQ9ULX9 164 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 BARX2Q9UMQ3 279 aaPredicted RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 L1RE1Q9UN81 338 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 POLIQ9UNA4 740 aa9.87□□□□□ -0.83
LDLR-210ENST00000559340 PRRC2BQ5JSZ5 2229 aaKnown RBP9.87□□□□□ -0.83
LDLR-210ENST00000559340 TSC2P49815 1807 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 A8MXQ7 604 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 F8W810 466 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 GABRDO14764 452 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 FSCN2O14926 492 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 GRM6O15303 877 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 TEX33O43247 280 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 ARHGEF15O94989 841 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 BPIFB4P59827 614 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 TRIM14Q14142 442 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 MRPL58Q14197 206 aaKnown RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 NFE2Q16621 373 aaPredicted RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 SOWAHAQ2M3V2 549 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 KLHDC7AQ5VTJ3 777 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 SPOPLQ6IQ16 392 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 CACNA2D4Q7Z3S7 1137 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 LIMS2Q7Z4I7 341 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 MRPL43Q8N983 215 aaKnown RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 ZNF397Q8NF99 534 aaPredicted RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 LNX1Q8TBB1 728 aaPredicted RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 BCL7CQ8WUZ0 217 aaPredicted RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 MYLIPQ8WY64 445 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 NT5C1AQ9BXI3 368 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 NUCKS1Q9H1E3 243 aaKnown RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 RXFP1Q9HBX9 757 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 APOBEC3GQ9HC16 384 aaKnown RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 DDX43Q9NXZ2 648 aaKnown RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 MTRRQ9UBK8 725 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 DNAJC12Q9UKB3 198 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 CDH9Q9ULB4 789 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 PCDHB4Q9Y5E5 795 aa9.86□□□□□ -0.83
LDLR-210ENST00000559340 TIMM13Q9Y5L4 95 aaPredicted RBP9.86□□□□□ -0.83
LDLR-210ENST00000559340 ATP8B3O60423 1300 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.85□□□□□ -0.83
LDLR-210ENST00000559340 GOLGA6L6A8MZA4 724 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 C2CD2LO14523 706 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 NCK2O43639 380 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 WEE2P0C1S8 567 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 SRGAP2BP0DMP2 458 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 UCHL3P15374 230 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 POU3F3P20264 500 aaPredicted RBP9.85□□□□□ -0.83
LDLR-210ENST00000559340 KLRC2P26717 231 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 ELF1P32519 619 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 ASPAP45381 313 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 NDUFV1P49821 464 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 ERVFC1P60507 584 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 INCA1Q0VD86 236 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 PTPN14Q15678 1187 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 ARHGAP44Q17R89 818 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 TSR1Q2NL82 804 aaKnown RBP9.85□□□□□ -0.83
LDLR-210ENST00000559340 FIGNQ5HY92 759 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 RTP2Q5QGT7 225 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 PLPP4Q5VZY2 271 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 TPGS2Q68CL5 300 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 PHLDB3Q6NSJ2 640 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 SCARA5Q6ZMJ2 495 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 C4orf50Q6ZRC1 276 aa9.85□□□□□ -0.83
LDLR-210ENST00000559340 RTL10Q7L3V2 364 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms