RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ZNF529Q6P280 563 aa2□□□□□ -2.09
USP3-209ENST00000558925 SEM1Q6ZVN7 128 aa2□□□□□ -2.09
USP3-209ENST00000558925 MICU3Q86XE3 530 aa2□□□□□ -2.09
USP3-209ENST00000558925 ULK2Q8IYT8 1036 aa2□□□□□ -2.09
USP3-209ENST00000558925 GPR135Q8IZ08 494 aa2□□□□□ -2.09
USP3-209ENST00000558925 CMTM4Q8IZR5 234 aa2□□□□□ -2.09
USP3-209ENST00000558925 NKAPQ8N5F7 415 aaKnown RBP2□□□□□ -2.09
USP3-209ENST00000558925 TMIEQ8NEW7 156 aa2□□□□□ -2.09
USP3-209ENST00000558925 OR56A3Q8NH54 315 aa2□□□□□ -2.09
USP3-209ENST00000558925 CYFIP2Q96F07 1278 aa2□□□□□ -2.09
USP3-209ENST00000558925 NEIL1Q96FI4 390 aaPredicted RBP2□□□□□ -2.09
USP3-209ENST00000558925 ZNF764Q96H86 408 aaPredicted RBP2□□□□□ -2.09
USP3-209ENST00000558925 DPYSL5Q9BPU6 564 aa2□□□□□ -2.09
USP3-209ENST00000558925 NDC1Q9BTX1 674 aa2□□□□□ -2.09
USP3-209ENST00000558925 LSM14BQ9BX40 385 aaKnown RBP2□□□□□ -2.09
USP3-209ENST00000558925 INO80BQ9C086 356 aaPredicted RBP2□□□□□ -2.09
USP3-209ENST00000558925 BARX1Q9HBU1 254 aaPredicted RBP2□□□□□ -2.09
USP3-209ENST00000558925 ARFGAP3Q9NP61 516 aa2□□□□□ -2.09
USP3-209ENST00000558925 PNPLA8Q9NP80 782 aa2□□□□□ -2.09
USP3-209ENST00000558925 CNNM1Q9NRU3 951 aa2□□□□□ -2.09
USP3-209ENST00000558925 ST6GALNAC1Q9NSC7 600 aaPredicted RBP2□□□□□ -2.09
USP3-209ENST00000558925 SAGE1Q9NXZ1 904 aa2□□□□□ -2.09
USP3-209ENST00000558925 CEP72Q9P209 647 aa2□□□□□ -2.09
USP3-209ENST00000558925 GRHPRQ9UBQ7 328 aa2□□□□□ -2.09
USP3-209ENST00000558925 AGAP1Q9UPQ3 857 aa2□□□□□ -2.09
USP3-209ENST00000558925 NR2E1Q9Y466 385 aa2□□□□□ -2.09
USP3-209ENST00000558925 hCG_1642624A0A1W2PR95 340 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 A0A1W2PRX2 142 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 CCDC78A2IDD5 438 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 CDHR4A6H8M9 788 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 TRIM43BA6NCK2 446 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 AQP12BA6NM10 295 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ISM1B1AKI9 464 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 E9PLN8 166 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 M0QYG6 137 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 BTN3A1O00481 513 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 NRP1O14786 923 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 SLC26A4O43511 780 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 RAD17O75943 681 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 PRSS23O95084 383 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 GASTP01350 101 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 FGAP02671 866 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ITGB1P05556 798 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 FTH1P19P0C7X4 201 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 IL2RBP14784 551 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 TYRP1P17643 537 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 FGFR2P21802 821 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ACRV1P26436 265 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 HSPA7P48741 367 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ZNF135P52742 658 aaPredicted RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 PTTG1IPP53801 180 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 UCP3P55916 312 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 C21orf58P58505 322 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 CREMQ03060 361 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 GALNT1Q10472 559 aaPredicted RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 SLC13A2Q13183 592 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 CTBP1Q13363 440 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 MRPL49Q13405 166 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 NFYCQ13952 458 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 BOP1Q14137 746 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 STARD3Q14849 445 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 KRT72Q14CN4 511 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ZRSR2Q15696 482 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 TMEM95Q3KNT9 176 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ZMAT1Q5H9K5 638 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 FAM47AQ5JRC9 791 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 DACT2Q5SW24 774 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 DCAF12L1Q5VU92 463 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 OTUD7BQ6GQQ9 843 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 LDHAL6AQ6ZMR3 332 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ZNF783Q6ZMS7 281 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ZNF365Q70YC5 407 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 DPP9Q86TI2 863 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 MYLK4Q86YV6 388 aaPredicted RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 SUGP1Q8IWZ8 645 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 MPP5Q8N3R9 675 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 ZNF808Q8N4W9 903 aaPredicted RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 SLC15A4Q8N697 577 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 MYCT1Q8N699 235 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 SHCBP1Q8NEM2 672 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 OR6B3Q8NGW1 331 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 IPO4Q8TEX9 1081 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 KBTBD7Q8WVZ9 684 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 TRIM43Q96BQ3 446 aaPredicted RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 NMD3Q96D46 503 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 TMEM176AQ96HP8 235 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 MSLNLQ96KJ4 702 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 VKORC1Q9BQB6 163 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 TTLL2Q9BWV7 592 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 TLR10Q9BXR5 811 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 STK31Q9BXU1 1019 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 PACSIN1Q9BY11 444 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 CPEB1Q9BZB8 566 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 DPH1Q9BZG8 443 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 UNKQ9C0B0 810 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 EPC1Q9H2F5 836 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 C12orf65Q9H3J6 166 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 STARD7Q9NQZ5 370 aa1.99□□□□□ -2.09
USP3-209ENST00000558925 PIH1D1Q9NWS0 290 aaKnown RBP1.99□□□□□ -2.09
USP3-209ENST00000558925 VSX1Q9NZR4 365 aaPredicted RBP1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 653.9 ms